View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16272_low_11 (Length: 336)
Name: NF16272_low_11
Description: NF16272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16272_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 321
Target Start/End: Complemental strand, 43486816 - 43486501
Alignment:
| Q |
13 |
agatgaaccattacaacaaatactaaaacgtcaaactgaaggttcctcaacttctcgatcaaccgtcacggaaacaaacgaccaagatacttactccaat |
112 |
Q |
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| T |
43486816 |
agatgaaccattacaacaaatactaaaacgtcaaactgaaggttcctcaacttctcgatcaaccgtcacggaaacaaatgaccaagaaacttactccaat |
43486717 |
T |
|
| Q |
113 |
gataggtggtt-------atgaacctatatttctattcgcaaaaattatcctcctctgtgctagaaccacatctaaaacaattcaagtctaatgaagaca |
205 |
Q |
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| T |
43486716 |
gataggtggttatgatttatgaacctatatttctattcgcaaaaattatcctcctctgtgctagaaccacatctaaaacaattcaagtctaatgaagaca |
43486617 |
T |
|
| Q |
206 |
ttatnnnnnnnnntagttgattattcatgaactcaagttaaataaattgtttattctaccaatattcttgagttattgttctaacagtagataatataat |
305 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43486616 |
ttataaaaaaaaaaagttgattattcatgaactcaagttaaataaattgtttattctacctatattcttgagttattgttctaacagtagataatataat |
43486517 |
T |
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| Q |
306 |
ttactcgcgatatttt |
321 |
Q |
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||||||| ||||||| |
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| T |
43486516 |
ttactcgttatatttt |
43486501 |
T |
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