View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16272_low_12 (Length: 311)
Name: NF16272_low_12
Description: NF16272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16272_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 8 - 295
Target Start/End: Complemental strand, 39587204 - 39586917
Alignment:
| Q |
8 |
tccaattataggcaacattcatcaactcaaacacccacttcaccgtaccttccacactctctcacaaaaatacggtcaagtcttttccctacggttcggt |
107 |
Q |
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| T |
39587204 |
tccaattataggcaacattcatcaactcaaacacccacttcaccgtaccttccacactctctcacaaaaatacggtcaagtcttttccctacggttcggt |
39587105 |
T |
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| Q |
108 |
tcacgttttgtcgtcgttgtttcatcaccttcggtcgtacacgaatgtttcacaaaaaatgacactattttagcaaaccggccacctcttctggcaggca |
207 |
Q |
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| T |
39587104 |
tcacgttttgtcgtcgttgtttcatcaccttctgtcgtacacgaatgtttcacaaaaaatgacactattttagcaaaccggccacctcttctggcaggca |
39587005 |
T |
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| Q |
208 |
aacacatcggatacaactacaccgcggtaaccgttgctccttatggcgatcactggcgtaacgtccgtcgtataatctcccttgacgt |
295 |
Q |
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| T |
39587004 |
aacacatcggatacaactacaccgcggtaaccgttgctccttatggcgatcactggcgtaacgtccgtcgtataatctcccttgacgt |
39586917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 133
Target Start/End: Original strand, 5883937 - 5884045
Alignment:
| Q |
25 |
ttcatcaactcaaacacccacttcaccgtaccttccacactctctcacaaaaatacggtcaagtcttttccctacggttcggttcacgttttgtcgtcgt |
124 |
Q |
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|||| ||||||||||| ||||| |||| || |||||||| | ||||||||||| || ||| ||||||| || |||||||||| ||| | ||||| || |
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| T |
5883937 |
ttcaccaactcaaacaaccactccaccacacattccacaccttatcacaaaaatatggccaaatcttttctctttggttcggttctcgtctcgtcgttgt |
5884036 |
T |
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| Q |
125 |
tgtttcatc |
133 |
Q |
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| T |
5884037 |
tgtttcatc |
5884045 |
T |
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