View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16272_low_14 (Length: 240)
Name: NF16272_low_14
Description: NF16272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16272_low_14 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 20637168 - 20637408
Alignment:
| Q |
1 |
cagagaagaggaaaaaagtcacacgttttttatgggcctagatgatgaactttatgg-acagttcactcaaatttgctagctacatatccaataccatca |
99 |
Q |
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| T |
20637168 |
cagagaagaggaaaaaagtcacacattttttatgggcctagatgatgaactttatgggacagttcgctcaaatttgctagctacagatccaataccatca |
20637267 |
T |
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| Q |
100 |
ttaaataagatgtactctatcctagtgcaagaagaaagaatgaggatcatcacacgaggtaaatgtgagagaacagaagtcatggccttggctgttcaag |
199 |
Q |
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| T |
20637268 |
ttaaataagatgtactctatcctagtacaagaagaaagaatgaggatcatcacacgaggtaaaggtgagagaacagaagtcatggccttggctgttcaag |
20637367 |
T |
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| Q |
200 |
caagcacaaggatgaagggacgtgagatgaaaaacaaatct |
240 |
Q |
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| T |
20637368 |
caagcacaaggatgaagggacgtgagatcaaaaacaaatct |
20637408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 52796005 - 52795765
Alignment:
| Q |
1 |
cagagaagaggaaaaaagtcacacgttttttatgggcctagatgatgaactttatgg-acagttcactcaaatttgctagctacatatccaataccatca |
99 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
52796005 |
cagagaagaggaaaaaagtcacacgtttttgatgggcctagatgatgaactttatgggacagttcgctcaaatttgctagctacagatccaataccatca |
52795906 |
T |
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| Q |
100 |
ttaaataagatgtactctatcctagtgcaagaagaaagaatgaggatcatcacacgaggtaaatgtgagagaacagaagtcatggccttggctgttcaag |
199 |
Q |
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| T |
52795905 |
ttaaataagatgtactctatcctagtacaagaagaaagaatgaggatcatcacacgagggaaaggtgagagaacagaagtcatggccttggctgttcaag |
52795806 |
T |
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| Q |
200 |
caagcacaaggatgaagggacgtgagatgaaaaacaaatct |
240 |
Q |
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| T |
52795805 |
caagcacaaggatgaagggacgtgagatcaaaaacaaatct |
52795765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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