View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16272_low_15 (Length: 239)
Name: NF16272_low_15
Description: NF16272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16272_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 45966463 - 45966682
Alignment:
| Q |
1 |
agcaaaaggaagacccaacatcaccctaacaacctgcactaacggctaagggcatcgaaacatccaaaaaatttacacacacatacccttcctaaaactg |
100 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
45966463 |
agcaaaaggaagacccataatcaccctgacaacctgcactaacagctaagggcatcgaaacatccaaaaaatttatacacacagacccttcctaaaactg |
45966562 |
T |
|
| Q |
101 |
aacaagcaaagcaacatgcactaacaacggggttcaaaccctctactaattnnnnnnnttatacacacagacccttcctnnnnnnnttatacacacagac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
45966563 |
aacaagcaaagcaacatgcactaacaacgaggttcaaaccctctactaatt-ccccccttatacacacagacccttcctacaaaatttatacacacagac |
45966661 |
T |
|
| Q |
201 |
cctctgctaattccctcaaaa |
221 |
Q |
| |
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||||| ||||||||||||||| |
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| T |
45966662 |
cctctactaattccctcaaaa |
45966682 |
T |
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