View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16272_low_16 (Length: 237)
Name: NF16272_low_16
Description: NF16272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16272_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 6234126 - 6233903
Alignment:
| Q |
1 |
gaaggttttgggaggccctcttcaatcaagcagttttatgtggatgttgacaaggaagagtggaagctagagacactatgcgacatcttcgagctgaccc |
100 |
Q |
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| T |
6234126 |
gaaggttttgggaggccctcttcaatcaagcagttttatgtggatgttgacaaggaagagtggaagctagagacactatgcgacatctttgagctgaccc |
6234027 |
T |
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| Q |
101 |
tgaaagct---aaatccatcactcattgtatcgtctttgtgaacactatcgacaaagtggactggctcacggacaagatgcgaagcagagatcattatgt |
197 |
Q |
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| T |
6234026 |
ttaaagcttataaatccatcactcattgtatcgtctttgtgaatactatcgacaaagtggactggctcacggacaagatgcgaagcagagatcattatgt |
6233927 |
T |
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| Q |
198 |
cattcatggtgacagggaccagaa |
221 |
Q |
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| T |
6233926 |
cattcatggtgacagggaccagaa |
6233903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 6226871 - 6226680
Alignment:
| Q |
1 |
gaaggttttgggaggccctcttcaatcaagcagttttatgtggatgttgacaaggaagagtggaagctagagacactatgcgacatcttcgagctgaccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||| |
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| T |
6226871 |
gaaggttttgggaggccctcttcaatcaagcagttttatgtggatgttgacaaggaagagtggaagctagagacactatgtgacatatttgagctgaccc |
6226772 |
T |
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| Q |
101 |
tgaaagctaaatccatcactcattgtatcgtctttgtgaacactatcgacaaagtggactggctcacggacaagatgcgaagcagagatcat |
192 |
Q |
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| T |
6226771 |
ttaaagctaaatccatcactcattgtatcgtctttgtgaataccatggacaaagtggactggctcatggacgagttgcgaagcagagatcat |
6226680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 6249475 - 6249434
Alignment:
| Q |
151 |
aaagtggactggctcacggacaagatgcgaagcagagatcat |
192 |
Q |
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| T |
6249475 |
aaagtggactggcttacggataagatgcgaagcagagatcat |
6249434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 6241072 - 6241036
Alignment:
| Q |
150 |
caaagtggactggctcacggacaagatgcgaagcaga |
186 |
Q |
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| T |
6241072 |
caaagtggactggctcatggacaaaatgcgaagcaga |
6241036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 6249589 - 6249521
Alignment:
| Q |
25 |
atcaagcagttttatgtggatgttgacaaggaagagtggaagctagagacactatgcgacatcttcgag |
93 |
Q |
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| T |
6249589 |
atcaagcagttttatgtcaatgtcgataaggaagaatggaagcttgagacattgtgcgacctctacgag |
6249521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 25 - 192
Target Start/End: Original strand, 17545269 - 17545436
Alignment:
| Q |
25 |
atcaagcagttttatgtggatgttgacaaggaagagtggaagctagagacactatgcgacatcttcgagctgaccctgaaagctaaatccatcactcatt |
124 |
Q |
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||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| |||||||||| |
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| T |
17545269 |
atcaagcagttttatgtcgatgttgagaaggaagagtggaagctagagacactatgcgacatctttgagctgaccgttaaagctaaatcgatcactcatt |
17545368 |
T |
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| Q |
125 |
gtatcgtctttgtgaacactatcgacaaagtggactggctcacggacaagatgcgaagcagagatcat |
192 |
Q |
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| T |
17545369 |
gtattgtctttgtggataccaggtgcaaagtggattggctcacggacaagatgcaaagcagagatcat |
17545436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 42718725 - 42718775
Alignment:
| Q |
25 |
atcaagcagttttatgtggatgttgacaaggaagagtggaagctagagaca |
75 |
Q |
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| T |
42718725 |
atcaagcagttctacgtgaatgttgacaaggaagagtggaaactagagaca |
42718775 |
T |
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