View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16272_low_5 (Length: 462)
Name: NF16272_low_5
Description: NF16272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16272_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 110 - 448
Target Start/End: Complemental strand, 7907660 - 7907322
Alignment:
| Q |
110 |
ggtgtcggtgcttcataataactaatagaagaagtaattaaaagtaagaaccttattggtttcttcttattaaaaacggcgtccggacgaacaaaaagaa |
209 |
Q |
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| T |
7907660 |
ggtgtgggtgcttcataataactaatagaagaagtaattaaaagtaagaaccttattggtttcttcttattaaaaacggcgtccggacgaacaaaaagaa |
7907561 |
T |
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| Q |
210 |
ggtctttgccattgggaactttccaagaagtaatgcaaccaccaaacaaatatatctcagcctcactaccagctggagaagtgagaacgagtttaggcaa |
309 |
Q |
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| T |
7907560 |
ggtctttgccattgggaactttccaagaagtaatgcaaccaccaaacaaatatatctcagcctcactaccagctggagaagtgagaacgagtttaggtaa |
7907461 |
T |
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| Q |
310 |
attcccttcaccttcggtaacttttactcccaaagtacttttttctttgtttcccaaacttgcaaatgcaattccactacatcgcagaaaaataattgtt |
409 |
Q |
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| T |
7907460 |
atttccttcaccttcggtaacttttactcccaaagtagttttttctttgtttcccaaacttgcaaatgcaattccactacatcgcagaaaaataattgtt |
7907361 |
T |
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| Q |
410 |
gatgaattattacaagctaggaaaatttgaagagaaaag |
448 |
Q |
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| T |
7907360 |
gatgaattattacaagctaggaaaatttgaagagaaaag |
7907322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 7907795 - 7907699
Alignment:
| Q |
4 |
tactataagttgtaaactaagttgtttatccacacagggccttagtaaataacaatgtaataaatatgtagcactcacatggttacattcaatcagt |
100 |
Q |
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| T |
7907795 |
tactataagttgtaaaataagttgtttatccaaacagggccttagtaaataacaatgtaatagatatgtagcacccacatggttacattcaatcagt |
7907699 |
T |
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