View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16272_low_6 (Length: 442)
Name: NF16272_low_6
Description: NF16272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16272_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 9498111 - 9497684
Alignment:
| Q |
1 |
caaatcaaacctcattcaaacagaattgaaacagtcaattaataagatcaataacacatacacaatgtactgtgattaagtgataaagcaaaatgtatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9498111 |
caaatcaaacctcattcaaacagaattgaaacagtcaattaataagatccataacacatacacaatgtactgtgattaagtgataaagcaaaatgtatca |
9498012 |
T |
|
| Q |
101 |
tcatgtctcattattcaggaaagccatgttcgggacagctctaaccaaagcatacagatccactaacaattaacatcagatcaatatcttttgttgtcat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9498011 |
tcatgtctcattattcaggaaagccatgttcgggacagctctaaccaaagcatacagatccactaacaattaacatcagatgaatatcttttgttgtcat |
9497912 |
T |
|
| Q |
201 |
ttacctcaccatattgtatttcttattgcttcaaataacaagaatcaatttgttaacatcaaaggagaaaggcacccgtctcccatcctatcaatcggca |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9497911 |
ttacctcaccatattgtatttctttttgtttcaaataacaagaatcaatttgttaacatcaaaggagaaaggcacccgtctcccatcccatcaatcggca |
9497812 |
T |
|
| Q |
301 |
agcctcagattattttaatgcagtacacttcatgtatgttcatggtaggagtcacaagttctataaaagtcctacatggggtgtacaaaatgtaggtact |
400 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9497811 |
agcctcagattattttaatgtagtacacttcatgtatgttcatggtaggagtcacaagttctataaaagtcctacatggggagtacaaaatgtaggtact |
9497712 |
T |
|
| Q |
401 |
gatttatttattgtcaatacctgaagac |
428 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
9497711 |
gatttatttattgtcaatacctgaagac |
9497684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University