View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16272_low_8 (Length: 425)
Name: NF16272_low_8
Description: NF16272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16272_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 40289125 - 40288723
Alignment:
| Q |
1 |
atacacaccatccatctgaagtgtcgatgctacatatcttatgtatgataagaagcaacaaaaaagactagaagcaattaacatttaggatnnnnnnnnn |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40289125 |
atacacaccatccatatgaagtgtcgatgctacatatcttatgtatgataagaagcaacaaaa--gactagaagcaattaacatttaggataaaaaaaaa |
40289028 |
T |
|
| Q |
101 |
nncgtacccagaaacaccatcagccttgacaaacttgggtaacccatcagacaaaccacgagcaaagccaggctgagtttgtacacgaactttgactgcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40289027 |
aa-gtacccagaaacaccatcagccttgacaaacttgggtaacccatcagacaaaccacgagcaaagccaggctgagtttgtacacgaactttgacagcc |
40288929 |
T |
|
| Q |
201 |
tccataggacaaagtgcacaatcagcaataacttctgctgaagcagaaccagctagatatatgaaagttttgtacttgactgcattctctggtccagcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40288928 |
tccataggacaaagtgcacaatcagcaataacttctgctgaagcagaaccagctagatatatgaaagttttgtacttgactgcattctctggtccagcaa |
40288829 |
T |
|
| Q |
301 |
gatctgagtaatactttttgaagaactcataaaatccaaacttgcatgctccttgagcactgtaaccaagcaaagttggcacccagcctttgaagaaacc |
400 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40288828 |
gatctgagtaatactttttgaagaactcgtaaaatccaaacttgcatgctccttgagcactgtaaccaagcaaagttggcacccagcctttgaagaaacc |
40288729 |
T |
|
| Q |
401 |
tctaac |
406 |
Q |
| |
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|||||| |
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| T |
40288728 |
tctaac |
40288723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 162 - 385
Target Start/End: Original strand, 32260887 - 32261110
Alignment:
| Q |
162 |
gcaaagccaggctgagtttgtacacgaactttgactgcctccataggacaaagtgcacaatcagcaataacttctgctgaagcagaaccagctagatata |
261 |
Q |
| |
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||||| |||||||||||||| ||||| ||||| || ||||| | || ||||||||| ||||||||||| || || || || |||||||| || || | |
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| T |
32260887 |
gcaaaaccaggctgagtttgaacacggactttaacagcctcgaatgggcaaagtgcaacgtcagcaataacctcagcagatgctgaaccagcaaggtaga |
32260986 |
T |
|
| Q |
262 |
tgaaagttttgtacttgactgcattctctggtccagcaagatctgagtaatactttttgaagaactcataaaatccaaacttgcatgctccttgagcact |
361 |
Q |
| |
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| || || ||||||||| |||||| ||| || ||||||| ||| || || ||||| || ||||||||||| || ||||| ||||| || || || ||||| |
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|
| T |
32260987 |
tcaaggtcttgtacttggctgcatactcggggccagcaatatcagaatagtacttcttaaagaactcatagaacccaaatttgcaagcaccctgggcact |
32261086 |
T |
|
| Q |
362 |
gtaaccaagcaaagttggcaccca |
385 |
Q |
| |
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||||||||| || ||||||||||| |
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|
| T |
32261087 |
gtaaccaagtaatgttggcaccca |
32261110 |
T |
|
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