View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16273_low_2 (Length: 382)
Name: NF16273_low_2
Description: NF16273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16273_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 11 - 324
Target Start/End: Original strand, 18702686 - 18703006
Alignment:
| Q |
11 |
aaagaacaagaattgcactgtcataaatacgcgaagctagttgaaaatca---------tcaacatgaccagaagatatcttctccaaaaaattatcatc |
101 |
Q |
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| T |
18702686 |
aaagaacaagaattgcactgtcgaaaatacgcgaagctagctgaacatcaactttgaaatcaacatgatcagaacatatcttctccaaaaaagtatcaaa |
18702785 |
T |
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| Q |
102 |
acnnnnnnnntgtcaaatagggttatgtttttataggaactgacatatgtttcggtatgtagtttatccatctcgtcctggtatacaaaacgtgggtcgt |
201 |
Q |
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| T |
18702786 |
acaagaaa--tgtcaaatagggttttatttttataggaagtgacatatgttttggtatgtatgttgtctatctcgtcctcatatacaaaacgtgggtctt |
18702883 |
T |
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| Q |
202 |
cgtcgtatggataggattgacttt---ttgatactttatacctgtctgtccgcctcggataagggtcatcgtatccagaaatccagacgtggcgcagctg |
298 |
Q |
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| T |
18702884 |
cgtagttcggatagcgatgactttctaataatactatttccctgtccgtccgcttc---ttaacgtagtcgtatccagacatccagacgtggcgcagctt |
18702980 |
T |
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| Q |
299 |
ctccactgacttgtttgagaagtgac |
324 |
Q |
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| T |
18702981 |
ctccactgacttgttggagaagtgac |
18703006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 44317729 - 44317886
Alignment:
| Q |
11 |
aaagaacaagaattgcactgtcataaatacgcgaagctagttgaaaatc---------atcaacatgaccagaagatatcttctccaaaaaattatcatc |
101 |
Q |
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| T |
44317729 |
aaagaacaagaattgcactgtcaaaaatacgagaagctagttgaacatcaacattgaaatcaacatgatcagaagatatcttctccaaaaaagcatcacc |
44317828 |
T |
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| Q |
102 |
acnnnnnnnntgtcaaatagggttatgtttttataggaactgacatatgtttcggtatgt |
161 |
Q |
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| T |
44317829 |
ac--aatatatgtcaaatagggttatgtttttagaggaagtgacatatgtttgggtatgt |
44317886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 269 - 324
Target Start/End: Original strand, 44317973 - 44318028
Alignment:
| Q |
269 |
gtatccagaaatccagacgtggcgcagctgctccactgacttgtttgagaagtgac |
324 |
Q |
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| T |
44317973 |
gtatccagaaatccatacgtggcgcagctgctccactgacttgttggagaagtgac |
44318028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 43897272 - 43897336
Alignment:
| Q |
260 |
agggtcatcgtatccagaaatccagacgtggcgcagctgctccactgacttgtttgagaagtgac |
324 |
Q |
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| T |
43897272 |
agggtcaccgtatctagaaagacagacgttgcgcagatgctccactgaattgttggagaagtgac |
43897336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 267 - 324
Target Start/End: Original strand, 4085465 - 4085522
Alignment:
| Q |
267 |
tcgtatccagaaatccagacgtggcgcagctgctccactgacttgtttgagaagtgac |
324 |
Q |
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| T |
4085465 |
tcgtatccagaaatccagacgtggcgcagctgttccactgacttgttggagaagtgac |
4085522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 4085196 - 4085344
Alignment:
| Q |
11 |
aaagaacaagaattgcactgtcataaatacgcgaagctagttgaaaatca---------tcaacatgaccagaagatatcttctccaaaaaattatcatc |
101 |
Q |
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| T |
4085196 |
aaagaacaataattgcactgtcgaaaatacgcgaagctagttgaacatcaacgttgaaatcaacatgatcagatgatatcttctccaaaaaagtaacaca |
4085295 |
T |
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| Q |
102 |
acnnnnnnnntgtcaaatagggttatgtttttataggaactgacatatgtt |
152 |
Q |
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| T |
4085296 |
a--taagatatgtcaaatagggttatgtttttataggaagtgacatatgtt |
4085344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 8158287 - 8158241
Alignment:
| Q |
11 |
aaagaacaagaattgcactgtcataaatacgcgaagctagttgaaaa |
57 |
Q |
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| T |
8158287 |
aaagaacaagaattgcactgtcataaatacgcgaagctagttgaaaa |
8158241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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