View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16274_high_1 (Length: 748)

Name: NF16274_high_1
Description: NF16274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16274_high_1
NF16274_high_1
[»] chr2 (2 HSPs)
chr2 (609-739)||(39406466-39406599)
chr2 (492-536)||(39406376-39406420)
[»] chr4 (3 HSPs)
chr4 (604-739)||(50430704-50430839)
chr4 (316-429)||(40273321-40273435)
chr4 (480-551)||(50430574-50430647)
[»] chr7 (3 HSPs)
chr7 (656-732)||(21672508-21672584)
chr7 (492-549)||(21672580-21672637)
chr7 (484-568)||(42085514-42085598)
[»] chr6 (1 HSPs)
chr6 (490-568)||(9221983-9222061)
[»] chr3 (1 HSPs)
chr3 (490-568)||(58674-58752)


Alignment Details
Target: chr2 (Bit Score: 96; Significance: 1e-46; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 609 - 739
Target Start/End: Original strand, 39406466 - 39406599
Alignment:
Q  609 ttttaagttttatcttcatctcctcattctctcccaccttctgcaataaaagctccaa---aacaacaacaatgattaagatctagcttccttgaggatg 705  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||   |||||||||||||||||| ||||||||||||||||||||    
T  39406466 ttttaagttttatcttcatctcctcattctctcccaccttctgcaataaaacctccaaaacaacaacaacaatgattaaaatctagcttccttgaggatg 39406565  T
Q  706 aagatcccaaaacaacaacaactatgatgatgtc 739  Q
    ||| ||||||||||||||  ||||||| ||||||    
T  39406566 aaggtcccaaaacaacaatgactatgaagatgtc 39406599  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 492 - 536
Target Start/End: Original strand, 39406376 - 39406420
Alignment:
Q  492 ggaaaatgatatttagtacggcacttttccatacgaatattcacg 536  Q
    ||||||||||||||| |||| ||||||| ||||||||||||||||    
T  39406376 ggaaaatgatatttaatacgacacttttgcatacgaatattcacg 39406420  T

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Target: chr4 (Bit Score: 80; Significance: 4e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 604 - 739
Target Start/End: Original strand, 50430704 - 50430839
Alignment:
Q  604 accacttttaagttttatcttcatctcctcattctctcccaccttctgcaataaaagctccaaaacaacaacaatgattaagatctagcttccttgagga 703  Q
    |||||||||||||||||||||||  |||||||||||||| || || ||||||||||  |||||||||||||||| ||||||||| ||||||| |||||||    
T  50430704 accacttttaagttttatcttcacttcctcattctctcctactttatgcaataaaacatccaaaacaacaacaacgattaagatttagcttctttgagga 50430803  T
Q  704 tgaagatcccaaaacaacaacaactatgatgatgtc 739  Q
    | ||| ||||||||||||||| ||||||| ||||||    
T  50430804 tcaagttcccaaaacaacaacgactatgaagatgtc 50430839  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 316 - 429
Target Start/End: Original strand, 40273321 - 40273435
Alignment:
Q  316 cattggaacaatgaagagcgagaccaaatggagtaaattagatt-ataaatccaaggatatatttgattctctaatgacagaaataacaaagacgtatgt 414  Q
    |||| ||||||||||||| ||||| ||||| ||||||| ||||| |||||| |||||||||| || | |||||||  ||||||||||||||||| |  ||    
T  40273321 cattagaacaatgaagagggagacgaaatgaagtaaatgagatttataaattcaaggatatagtttactctctaacaacagaaataacaaagacatccgt 40273420  T
Q  415 ggtgaaaaataaaag 429  Q
    |||||||||||||||    
T  40273421 ggtgaaaaataaaag 40273435  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 480 - 551
Target Start/End: Original strand, 50430574 - 50430647
Alignment:
Q  480 tataaaaaataa--ggaaaatgatatttagtacggcacttttccatacgaatattcacggatgcctgaaaacat 551  Q
    ||||||||||||  |||||||||||||| |||||| | |||| |||||||| ||||| ||| || |||||||||    
T  50430574 tataaaaaataataggaaaatgatatttggtacgggagttttgcatacgaaaattcaaggacgcgtgaaaacat 50430647  T

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Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 656 - 732
Target Start/End: Complemental strand, 21672584 - 21672508
Alignment:
Q  656 aaaagctccaaaacaacaacaatgattaagatctagcttccttgaggatgaagatcccaaaacaacaacaactatga 732  Q
    |||| ||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||| | |||||||    
T  21672584 aaaacctccaaaacaagaacaatgattaagatctagcttctttgaggttgaagatcccaaaacaacagcgactatga 21672508  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 492 - 549
Target Start/End: Complemental strand, 21672637 - 21672580
Alignment:
Q  492 ggaaaatgatatttagtacggcacttttccatacgaatattcacggatgcctgaaaac 549  Q
    ||||||||||||||||||| | | |||| |||||| ||||||||||||||||||||||    
T  21672637 ggaaaatgatatttagtacaggaattttgcatacggatattcacggatgcctgaaaac 21672580  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 484 - 568
Target Start/End: Original strand, 42085514 - 42085598
Alignment:
Q  484 aaaaataaggaaaatgatatttagtacggcacttttccatacgaatattcacggatgcctgaaaacatgcaatttcaacgtgctg 568  Q
    ||||| ||||||||||||||||  ||||  |  ||| |||||||| |||||| ||||  | ||||||||||||||||||||||||    
T  42085514 aaaaacaaggaaaatgatatttgttacgagagatttgcatacgaaaattcacagatgtttaaaaacatgcaatttcaacgtgctg 42085598  T

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Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 490 - 568
Target Start/End: Original strand, 9221983 - 9222061
Alignment:
Q  490 aaggaaaatgatatttagtacggcacttttccatacgaatattcacggatgcctgaaaacatgcaatttcaacgtgctg 568  Q
    ||||||||||||||||  ||||| |  ||| |||||||| ||| |||||||  ||||||||||||||||||||||||||    
T  9221983 aaggaaaatgatatttgttacgggagatttgcatacgaaaatttacggatgtttgaaaacatgcaatttcaacgtgctg 9222061  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 490 - 568
Target Start/End: Complemental strand, 58752 - 58674
Alignment:
Q  490 aaggaaaatgatatttagtacggcacttttccatacgaatattcacggatgcctgaaaacatgcaatttcaacgtgctg 568  Q
    ||||||||||||||||  ||||| |  ||| |||||||| |||||||||||  | ||||||||||||||||||||||||    
T  58752 aaggaaaatgatatttgttacgggagatttgcatacgaaaattcacggatgtttaaaaacatgcaatttcaacgtgctg 58674  T

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