View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16274_high_2 (Length: 624)
Name: NF16274_high_2
Description: NF16274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16274_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 584; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 19 - 614
Target Start/End: Original strand, 28667065 - 28667660
Alignment:
| Q |
19 |
tcattgcaaattcatcaacccctttaattgatttcttgagttttctttctacacctaagttaagaagcctcatgaacttccaagcacatgtaggcataac |
118 |
Q |
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| T |
28667065 |
tcattgcaaattcatcaacccctttaattgatttcttgagttttctttctacacctaagttaagaagcctcatgaacttccaagcacacgtaggcataac |
28667164 |
T |
|
| Q |
119 |
gaaacgaagcacggtggcttctgttgcatcctcaaaggcttttgcaaatggtatctcaggaagtttttgactcaaacaaccaggatcaacaccaaaagct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28667165 |
gaaacgaagcacggtggcttctgttgcatcctcaaaggcttttgcaaatggtatctcaggaagtttttgactcaaacaaccaggatcaacaccaaaagct |
28667264 |
T |
|
| Q |
219 |
atcatacaaacatcgtcaaaagttagtcttaaaagaatgtcttgaagatctgtgacagcccttttatcaactgattcatctaaaacaggtaaaagccttg |
318 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28667265 |
atcatacaaacattgtcaaaagttagtcttaaaagaatgtcttgaagatctgtgacagcccttttatcaactgattcatctaaaacaggtaaaagccttg |
28667364 |
T |
|
| Q |
319 |
aatgaacaagctcaaacaaagaatcagttgttaaatttctgaacttggtcgaatgaaactcgatgctcgctgtttttctttgtttttgccatatttcatc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28667365 |
aatgaacaagctcaaacaaagaatcagttgttaaatttctgaacttggtcgaatgaaactcgatgctcgctgtttttctttgtttttgccatatttcatc |
28667464 |
T |
|
| Q |
419 |
atctgcactgaatataccatctccaagtaagtcccttaccatgtttctaaagtaagttcctttaggaaagttgatgaatttggttttgagaaggtgttcg |
518 |
Q |
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| T |
28667465 |
atctgcactgaatataccatctccaagtaagtcccttaccatgtttctaaagtaagttcctttaggaaagttgatgaatttggttttgagaaggtgttcg |
28667564 |
T |
|
| Q |
519 |
aggtttcgaggatcagaagtgactatgcagttaaggctgctgaaagaaggacctttgaatctaaaagtcccattttgtttgttaagagtgtctgtg |
614 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28667565 |
aggtttcgaggatcagaagtgactatgcagttaaggctgctgaaagaaggacctttgaatctaaaagtcccattttgtttgttaagaatgtctgtg |
28667660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 191 - 448
Target Start/End: Complemental strand, 13887304 - 13887047
Alignment:
| Q |
191 |
caaacaaccaggatcaacaccaaaagctatcatacaaacatcgtcaaaagttagtcttaaaagaatgtcttgaagatctgtgacagcccttttat-caac |
289 |
Q |
| |
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||||||| |||||||||| ||||||||||||||||||||| |||||||||||||| || | ||| ||||||||||| || | || ||| | |||| |
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| T |
13887304 |
caaacaagaaggatcaacatcaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatcttgaagatcgatggaaaccgatttcttcaac |
13887205 |
T |
|
| Q |
290 |
tgattcatctaaaacaggtaaaagccttgaatgaacaagctcaaacaaagaatcagttgttaaatttctgaacttggtcgaatgaaactcgatgctcgct |
389 |
Q |
| |
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||| |||||| ||||||| ||||| | |||||||||||||| |||||||||||||| || || ||||| || |||||||||||||| |||||| |
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| T |
13887204 |
-gatgaatctaagacaggtatgagcctattgttcacaagctcaaacaatgaatcagttgttaatttcctaaactttgttgaatgaaactcgatactcgct |
13887106 |
T |
|
| Q |
390 |
gtttttctttgtttttgccatatttcatcatctgcactgaatataccatctccaagtaa |
448 |
Q |
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||||| |||||||| |||||| |||| | |||| || ||| ||||| ||||||||||| |
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| T |
13887105 |
gttttcctttgtttctgccatgtttcgttatctacagcgaaaataccgtctccaagtaa |
13887047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 192 - 269
Target Start/End: Original strand, 13897901 - 13897978
Alignment:
| Q |
192 |
aaacaaccaggatcaacaccaaaagctatcatacaaacatcgtcaaaagttagtcttaaaagaatgtcttgaagatct |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | ||| |||||||||||| |
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| T |
13897901 |
aaacaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatcttgaagatct |
13897978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 13897733 - 13897800
Alignment:
| Q |
24 |
gcaaattcatcaacccctttaattgatttcttgagttttctttctacacctaagttaagaagcctcat |
91 |
Q |
| |
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|||||||||||||| || |||||||||||||| |||||||| | |||||||||||||| |||||| |
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| T |
13897733 |
gcaaattcatcaactttttgtattgatttcttgagctttctttccatacctaagttaagaaacctcat |
13897800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 417
Target Start/End: Original strand, 13898055 - 13898126
Alignment:
| Q |
346 |
ttgttaaatttctgaacttggtcgaatgaaactcgatgctcgctgtttttctttgtttttgccatatttcat |
417 |
Q |
| |
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||||||| || || || || ||||||||||||||||| |||||| |||| |||||||| |||||| |||||| |
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| T |
13898055 |
ttgttaacttcctaaaatttgtcgaatgaaactcgatactcgctattttcctttgtttctgccatgtttcat |
13898126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 193 - 231
Target Start/End: Original strand, 7295907 - 7295945
Alignment:
| Q |
193 |
aacaaccaggatcaacaccaaaagctatcatacaaacat |
231 |
Q |
| |
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|||||||||||||||||||||||| |||||| ||||||| |
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| T |
7295907 |
aacaaccaggatcaacaccaaaagatatcatgcaaacat |
7295945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 195 - 448
Target Start/End: Original strand, 1034961 - 1035214
Alignment:
| Q |
195 |
caaccaggatcaacaccaaaagctatcatacaaacatcgtcaaaagttagtcttaaaagaatgtcttgaagatctgtgacagcccttttatcaactgatt |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| | | ||| |||||||||||| || || | |||| | | |||| |
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| T |
1034961 |
caaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctcagcaaaatatcttgaagatctatggcaacatttttcttcaatgata |
1035060 |
T |
|
| Q |
295 |
catctaaaacaggtaaaagccttgaatgaacaagctcaaacaaagaatcagttgttaaatttctgaacttggtcgaatgaaactcgatgctcgctgtttt |
394 |
Q |
| |
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||||| || |||| ||||| | ||||||||||| | || ||| ||||||| ||||| || || ||||||||||||||||| || ||| |||| |
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| T |
1035061 |
attctaagactggtatgagcctattgttcacaagctcaaaaattgactcatttgttaactttctaaaatttgtcgaatgaaactcgatactagctatttt |
1035160 |
T |
|
| Q |
395 |
tctttgtttttgccatatttcatcatctgcactgaatataccatctccaagtaa |
448 |
Q |
| |
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|||||||| |||||| |||||| || ||| |||| ||||| ||||| ||||| |
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| T |
1035161 |
cctttgtttctgccatgtttcattgtcagcagtgaaaataccgtctccgagtaa |
1035214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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