View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16274_low_4 (Length: 401)
Name: NF16274_low_4
Description: NF16274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16274_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 36603624 - 36603241
Alignment:
| Q |
1 |
tttggacatgtccaggtgacacagtattctacgatgcatcagttatttggggcttaattggtccaagaagaatcttcggaaacttaggaacctacgagaa |
100 |
Q |
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| T |
36603624 |
tttggacatgtccaggtgacacagtattctacgatgcatcagttatttggggcttaattggtccaagaagaatcttcggaaacttaggaacctacgagaa |
36603525 |
T |
|
| Q |
101 |
tatcaattggttcttcctaggtggagccattgctcctttgttagtttggttagctacaagagcctttccacaacaagaatggattaaactcatcaacatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36603524 |
tatcaattggttcttcctaggtggagccattgctcctttgttagtttggttagctacaagagcctttccacaacaagaatggattaaactcatcaacatg |
36603425 |
T |
|
| Q |
201 |
cctgtgttgataggtgctactggaatgatgccaccagctacagcagtgaattacactagctggatcattgttggttttttgtctgggtttgttgtgtata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36603424 |
cctgtgttgataggtgctactggaatgatgccaccagctacagcagtgaattacactagctggatcattgttggttttttgtctggttttgttgtgtata |
36603325 |
T |
|
| Q |
301 |
ggtataaaccagattggtggcagcgtcataattatgtgttgtctggtgcattggatgctggtcttgctttcatgggtgtggttt |
384 |
Q |
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||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36603324 |
ggtataagccagaatggtggcagcgtcataattatgtgttgtctggtgcattggatgctggtcttgctttcatgggtgtggttt |
36603241 |
T |
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