View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16274_low_5 (Length: 389)
Name: NF16274_low_5
Description: NF16274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16274_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 17 - 370
Target Start/End: Complemental strand, 35189544 - 35189196
Alignment:
| Q |
17 |
catcatcgaaaccacggtgaacagtaccgaaagtgccacgagctaagacactcttgatgatgaggttagaaggatcaatttcccactcttctctttgctc |
116 |
Q |
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| T |
35189544 |
catcatagaaaccacggtgaacagtaccgaaagtgccacgagctaagacactcttgatgatgaggttagaaggatcaatttcccactcttctctttgctc |
35189445 |
T |
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| Q |
117 |
catgttattaccaccagtagtagcaatagagtttgagtgatcatgagaagaatcatcatttaccttgttgaagtgtttctcaagttgttcatcaatggtt |
216 |
Q |
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| T |
35189444 |
catgttattaccaccagtagtagcaatagagtttgagtgatcatgagaagaatcatcatttaccttgttgaagtgtttctcaagttgttcatcaatggtt |
35189345 |
T |
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| Q |
217 |
tttagatcaatttgatcagctctcacaaacccatcattcatttttccacaccctatcttctgaggatgtgattgattattggtgcagcataaatagaata |
316 |
Q |
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| T |
35189344 |
tttagatcaatttgatcagctctcacaaacccatcattcatttttccacaccctatcttctgagaatgtgattgattattggtgcagcataaatagaata |
35189245 |
T |
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| Q |
317 |
gaatagaatagaggggacattgattgtggtaaaatgtagtattatggtggatag |
370 |
Q |
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| T |
35189244 |
gaa-----tagaggggacattgattgtggtaaaatgtagtattatggtggatag |
35189196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 43970898 - 43970824
Alignment:
| Q |
27 |
accacggtgaacagtaccgaaagtgccacgagctaagacactcttgatgatgaggttagaaggatcaatttccca |
101 |
Q |
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| T |
43970898 |
accacgatgaacagtgccaaaagtgccacgagcaataacacttttgatgatgagtttagaaggatcaatttccca |
43970824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 252
Target Start/End: Complemental strand, 43970669 - 43970595
Alignment:
| Q |
178 |
accttgttgaagtgtttctcaagttgttcatcaatggtttttagatcaatttgatcagctctcacaaacccatca |
252 |
Q |
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| T |
43970669 |
accttgttgagatgtctttcaagctgttcatcgatgcttttcagatcaatctgatctgctcttacaaacccatca |
43970595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 1663834 - 1663755
Alignment:
| Q |
27 |
accacggtgaacagtaccgaaagtgccacgagctaagacactcttgatgatgaggttagaaggatcaatttcccactctt |
106 |
Q |
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| T |
1663834 |
accacgatgaacagtaccaaaagtaccacgagcaatgacagttttgataataagtttagaaggatcaatctcccattctt |
1663755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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