View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16275_high_11 (Length: 366)
Name: NF16275_high_11
Description: NF16275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16275_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 5765085 - 5764798
Alignment:
| Q |
18 |
attgatgcgctcaaattcttgggcagacgaatgatgaaatactcccagttgcattatttttgttgaaaattatttccaacgccttggaatggccacaacc |
117 |
Q |
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| T |
5765085 |
attgatgcgctcaaattcttgggcagacgaatgatgaaataatcccagttgcattatttttgttgaaaattatttccaacgccttggaatggccacaacc |
5764986 |
T |
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| Q |
118 |
tttcatttgaatcagagaagctttataatgtgtctaaagtagtatcagcataccatcaatacattagcaacattgacaaataaaattaatctaaatctgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5764985 |
tttcatttgaatcagagaagctttataatgtgtctaaagtagtatcagcataccatcaatacattagcaacattgacaaataaaattaatctaaatctgc |
5764886 |
T |
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| Q |
218 |
taacaaaacctataaaagtcaaatcgtacctgaagataattttgtca-----ctttacttgtagtaacaatgttaattgataaaatgc |
300 |
Q |
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| T |
5764885 |
taacaaaacctataaaagtcaaatcgtacctgaagataattttgtcaaacctctttacttgtagtaacaatgttaattgataaaatgc |
5764798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 5770630 - 5770410
Alignment:
| Q |
18 |
attgatgcgctcaaattcttgggc-agacgaatgatgaaatactcccagttgcattatttttgttgaaaattatttccaacgccttggaatggccacaac |
116 |
Q |
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| T |
5770630 |
attgatgcgctccaattctttggataaatgaatgatgaaatactcctagttgcattatttttgttgaaaattatttccaacgccttggaatggtcacacc |
5770531 |
T |
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| Q |
117 |
ctttcatttgaatcagagaagc-tttataatgtgtctaaagtagtatcagcataccatcaatacattagcaacattgacaaataaaattaatctaaatct |
215 |
Q |
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| T |
5770530 |
ctttcatttgaattggagaaacatttataatgtgcctaa---agtatcagcataccatcaatacaatagcaacattgactgataaaattaatgtcaattt |
5770434 |
T |
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| Q |
216 |
gctaacaaaacctataaaagtcaa |
239 |
Q |
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| T |
5770433 |
gcaaacaaaacctacaaaagtcaa |
5770410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 69 - 261
Target Start/End: Original strand, 42600269 - 42600460
Alignment:
| Q |
69 |
cattatttttgttgaaaattatttccaacgccttggaatggccacaacctttcatttgaatcagagaagctttataatgtgtctaaagtagtatcagcat |
168 |
Q |
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| T |
42600269 |
cattatttttgttgaatatgatttccaacaactt-atatggtcacaacctttcttttgaaattgagatgctttataatgtgtctaaaataatataagcat |
42600367 |
T |
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| Q |
169 |
accatcaatacattagcaacattgacaaataaaattaatctaaatctgctaacaaaacctataaaagtcaaatcgtacctgaagataattttg |
261 |
Q |
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| | ||||||||||| ||| |||||||||||||||||| ||||||| ||| |||||||||||| | | || | ||||| |||||||||||| |
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| T |
42600368 |
atcgtcaatacattaacaatattgacaaataaaattaaagtaaatctactaccaaaacctataagaatttaaccataccttaagataattttg |
42600460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 46 - 225
Target Start/End: Complemental strand, 35338735 - 35338557
Alignment:
| Q |
46 |
gaatgatgaaatactcccagttgcattatttttgttgaaaattatttccaacgccttggaatggccacaacctttcatttgaatcagagaagctttataa |
145 |
Q |
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|||||||||| |||| | |||| |||||| ||||||||| || ||||||||| | | ||||| |||| ||||| |||||| | |||| ||||||| | |
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| T |
35338735 |
gaatgatgaagtacttc-agtttcattatatttgttgaatatgatttccaacaacctataatggtcacaccctttattttgaaactgagatgctttatca |
35338637 |
T |
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| Q |
146 |
tgtgtctaaagtagtatcagcataccatcaatacattagcaacattgacaaataaaattaatctaaatctgctaacaaaa |
225 |
Q |
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| T |
35338636 |
tgtgtctaaaataatataagcatatcgtcaatacattaacaatattgacaaataaaattaatttaaatctacaaacaaaa |
35338557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 240
Target Start/End: Original strand, 19512461 - 19512657
Alignment:
| Q |
46 |
gaatgatgaaatactcccagttgcattatttttgttgaaaattatttccaacgccttggaatggccacaacctttcatttgaatcagagaagctttataa |
145 |
Q |
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|||||||||| |||| | |||| |||||||||||||||| || ||||||||| ||| ||||| | || ||||| |||||| | |||| ||||||| | |
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| T |
19512461 |
gaatgatgaagtacttc-agtttcattatttttgttgaatatgatttccaacaacttataatggtcgcaccctttattttgaaactgagatgctttatca |
19512559 |
T |
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| Q |
146 |
tgtgtctaaagtagtatcagcataccatc---aatacattagcaacattgacaaataaaattaatctaaatctgctaacaaaacctataaaagtcaaa |
240 |
Q |
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| T |
19512560 |
tgtgtctaaaataatataagcatatcgtcaataatacattaacattattggcaaataaaattaatataaatctactcacaaaaccaataaaaatcaaa |
19512657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 234
Target Start/End: Complemental strand, 18368178 - 18367987
Alignment:
| Q |
46 |
gaatgatgaaatactcccagttgcattatttttgttgaaaattatttccaacgccttggaatggccacaacctttcatttgaatcagagaagctttataa |
145 |
Q |
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|||||||||| |||| | |||| |||||||||||||||| || ||||||||| ||| ||||| | || ||||| |||||| | |||| ||||||| | |
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| T |
18368178 |
gaatgatgaagtacttc-agtttcattatttttgttgaatatgatttccaacaacttataatggtcgcaccctttattttgaaactgagatgctttatca |
18368080 |
T |
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| Q |
146 |
tgtgtctaaagtagtatcagcataccatc---aatacattagcaacattgacaaataaaattaatctaaatctgct-aacaaaacctataaaa |
234 |
Q |
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|||||||||| || ||| |||||| | || ||||||||| || |||| |||||||||||||| ||||||| || ||||||||| |||||| |
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| T |
18368079 |
tgtgtctaaaataatataagcatatcgtcaataatacattaacattattggcaaataaaattaatataaatctactcaacaaaaccaataaaa |
18367987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 234
Target Start/End: Original strand, 36594745 - 36594936
Alignment:
| Q |
46 |
gaatgatgaaatactcccagttgcattatttttgttgaaaattatttccaacgccttggaatggccacaacctttcatttgaatcagagaagctttataa |
145 |
Q |
| |
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|||||||||| |||| | |||| |||||||||||||||| || ||||||||| ||| ||||| | || ||||| |||||| | |||| ||||||| | |
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| T |
36594745 |
gaatgatgaagtacttc-agtttcattatttttgttgaatatgatttccaacaacttataatggtcgcaccctttattttgaaactgagatgctttatca |
36594843 |
T |
|
| Q |
146 |
tgtgtctaaagtagtatcagcataccatc---aatacattagcaacattgacaaataaaattaatctaaatctgct-aacaaaacctataaaa |
234 |
Q |
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|||||||||| || ||| |||||| | || ||||||||| || |||| |||||||||||||| ||||||| || ||||||||| |||||| |
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| T |
36594844 |
tgtgtctaaaataatataagcatatcgtcaataatacattaacattattggcaaataaaattaatataaatctactcaacaaaaccaataaaa |
36594936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 128
Target Start/End: Original strand, 1240524 - 1240617
Alignment:
| Q |
34 |
tcttgggcagacgaatgatgaaatactcccagttgcattatttttgttgaaaattatttccaacgccttggaatggccacaacctttcatttgaa |
128 |
Q |
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| T |
1240524 |
tcttgggtagatgaatgatgaagtactcc-agctgcattatttttgttgaatatgatatccagcaacttgtaatggtcacaccctttcttttgaa |
1240617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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