View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16275_high_24 (Length: 245)
Name: NF16275_high_24
Description: NF16275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16275_high_24 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 49689580 - 49689336
Alignment:
| Q |
1 |
aggagagaataagaagtgtatagagacgtagatctcaaagctgacagaacaaatggatttaactgaaaaaaccgccaaataaccaacaggtactagcaac |
100 |
Q |
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| T |
49689580 |
aggagaaaataagaagtgtatagaaacatagatctcaaagctgacagaacaaatggatttaactgaaaaaaccgccaaataatcaacaggtactagcaac |
49689481 |
T |
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| Q |
101 |
tcagtggttaagaaagaacttcaaaagtatatactagcgttttgcatctttctaaagccaattccaatagttttggatcaaaaccctaaatggttagatg |
200 |
Q |
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| T |
49689480 |
tcagtggttaagaaagaacttcaaaagtatatactagcgttttgcatctttctaaagccaattccaatagttttggatcaaaaccctaaatggttagatg |
49689381 |
T |
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| Q |
201 |
catgatcatcacagcaccactgaacacatacctaacatttgcctc |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49689380 |
catgatcatcacagcaccactgaacacatacctaacatttgcctc |
49689336 |
T |
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