View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16275_high_33 (Length: 210)
Name: NF16275_high_33
Description: NF16275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16275_high_33 |
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| [»] scaffold0044 (1 HSPs) |
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Alignment Details
Target: scaffold0044 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 92027 - 91851
Alignment:
| Q |
19 |
atgaagaaggaccattagcaagcgagttttgaagaaccaaacacaagcatatcccaaatcatgagataccacaatcggaaagatgaaatgaccgagtagt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
92027 |
atgaagaaggaccattagcaagcgagttttgaagaaccaaacacaagcacaacccaaatcatgagataccacaatcggaaagatgaaatgaccgagtagg |
91928 |
T |
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| Q |
119 |
tgccggagatttacagaccttttcgagtta----tgcgaccacggttaatgcttcatggttgtgcaatggtgatatt |
191 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
91927 |
tgccggagatttacagaccttttcgagttatgcgtgcgaccacggttaatgcttcatggttgtgcaatggtgatatt |
91851 |
T |
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