View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16275_high_4 (Length: 452)

Name: NF16275_high_4
Description: NF16275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16275_high_4
NF16275_high_4
[»] chr3 (10 HSPs)
chr3 (17-392)||(224827-225202)
chr3 (17-447)||(210290-210723)
chr3 (58-399)||(216941-217282)
chr3 (58-399)||(221886-222227)
chr3 (58-449)||(197013-197404)
chr3 (58-394)||(204789-205125)
chr3 (58-351)||(226110-226403)
chr3 (247-345)||(198274-198372)
chr3 (179-345)||(203516-203682)
chr3 (247-351)||(211667-211771)
[»] chr5 (1 HSPs)
chr5 (60-450)||(29838165-29838555)
[»] chr4 (1 HSPs)
chr4 (58-394)||(6903368-6903704)
[»] chr1 (1 HSPs)
chr1 (179-367)||(3808343-3808532)


Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 17 - 392
Target Start/End: Complemental strand, 225202 - 224827
Alignment:
17 actgatgagttgttttataatcaattaaacaagtgataataactgcagagaattcctgaagtctttataacaatatatgggagcgaactcaagaatgttg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
225202 actgatgagttgttttataatcaattaaacaagtgataataactgcagagaattcctgaagtctttataacaatatatgggagcgaactcaagaatgttg 225103  T
117 ctacaattactgtaccggatggtcttacttggaaattggaattgaagaaacgtggggaggatgtttacttttgcaacaaatggaaacagtttgcagaata 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
225102 ctacaattactgtaccggatggtcttacttggaaattggaattgaagaaacgtggggaggatgtttacttttgcaacaaatggaaacaatttgcagaata 225003  T
217 ctattctttaagatacggttgcttcatgtctttcaaatatgaagggaattcaaagtttagtgttattatatttgatgcaacttctgttgaaagttcctat 316  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | || ||||    
225002 ctattctttaagatatggttgcttcatgtctttcaaatatgaagggaattcaaagtttagtgttattatatttgatgtaacttctgttgagatttgctat 224903  T
317 cctttcgaaacttcaagaactaatggagaaccaaaaacaaattatcctagttctagaaaaaggtccaaggttgaaa 392  Q
    ||  || ||||| |||| |||||||||||| |||| ||| | | ||||||  |||  |||||||||| ||||||||    
224902 ccactcaaaactccaagtactaatggagaaacaaacacagagtgtcctagacctacgaaaaggtccagggttgaaa 224827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 447
Target Start/End: Complemental strand, 210723 - 210290
Alignment:
17 actgatgagttgttttataatcaattaaacaagtgataataactgcagagaattcctgaagtctttataacaatatatgggagcgaactcaagaatgttg 116  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||  |||||||||||| | |||||  |||||| |||||||||    
210723 actgatgagttattttataatcaattaaacaagtgatgataactgcagagaattccagaaaactttataacaatgtttgggaatgaactcgagaatgttg 210624  T
117 ctacaattactgtaccggatggtcttacttggaaattggaattgaagaaacgtggggaggatgtttacttttgcaacaa---atggaaacagtttgcaga 213  Q
    ||||| ||||||| || ||||||  |  |||| || |||| ||||||||| |||| |||||||||||||||||||||||   |||| |||||||||||||    
210623 ctacagttactgttcccgatggttgtgattgggaaatggacttgaagaaatgtggcgaggatgtttacttttgcaacaaggaatggcaacagtttgcaga 210524  T
214 atactattctttaagatacggttgcttcatgtctttcaaatatgaagggaattcaaagtttagtgttattatatttgatgcaacttctgttgaaagttcc 313  Q
    |||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||| || |    
210523 atactattctttaagatacggttgcttcctgtctttcagatacgaagggaattcaaattttagcgttattatatttgatgcaacttctgttgaaatttgc 210424  T
314 tatcctttcgaaacttcaagaactaatggagaaccaaaaacaaattatcctagttctagaaaaaggtccaaggttgaaacatgtgagaggcttcggaaaa 413  Q
    ||||| ||  ||||| |||| |||| ||||||| |||| ||  | | ||||||  |||  ||||||||||||||||||||| ||||||| |   ||||||    
210423 tatccattaaaaactccaagtactagtggagaaacaaacaccgagtgtcctaggcctatgaaaaggtccaaggttgaaacaagtgagagtccagggaaaa 210324  T
414 aggtcaaaaacatgtctaaatatgcttctaaaag 447  Q
    ||||||||| ||||||||| ||||||| ||||||    
210323 aggtcaaaagcatgtctaattatgcttataaaag 210290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 58 - 399
Target Start/End: Complemental strand, 217282 - 216941
Alignment:
58 actgcagagaattcctgaagtctttataacaatatatgggagcgaactcaagaatgttgctacaattactgtaccggatggtcttacttggaaattggaa 157  Q
    |||| |||||||||| || |  ||||||| || || |||||  ||||||||||||||||||||||||||||| || ||||||  |  |||| || || ||    
217282 actgtagagaattccagatgaatttataaaaagatttgggaatgaactcaagaatgttgctacaattactgttcccgatggttgtgattgggaaatgaaa 217183  T
158 ttgaagaaacgtggggaggatgtttacttttgcaacaaatggaaacagtttgcagaatactattctttaagatacggttgcttcatgtctttcaaatatg 257  Q
     |||||||| | ||  | || ||||||||||||||||||||| ||||||||||||||||||||||| || | || |||| |||| ||| |||||||||||    
217182 ctgaagaaatgcggcaatgacgtttacttttgcaacaaatggcaacagtttgcagaatactattctatagggtatggttccttcctgtgtttcaaatatg 217083  T
258 aagggaattcaaagtttagtgttattatatttgatgcaacttctgttgaaagttcctatcctttcgaaacttcaagaactaatggagaaccaaaaacaaa 357  Q
    ||||| ||||||||||||||||  |||||||||||||||||||| |||| | || |||||| ||| |||||  ||| || ||||||||| ||||||||||    
217082 aaggggattcaaagtttagtgtctttatatttgatgcaacttctattgagatttgctatccattcaaaactcaaagtacaaatggagaaacaaaaacaaa 216983  T
358 ttatcctagttctagaaaaaggtccaaggttgaaacatgtga 399  Q
     | || |||| |||| ||||||||||||||||||||| ||||    
216982 gtttcatagtcctaggaaaaggtccaaggttgaaacaagtga 216941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 58 - 399
Target Start/End: Complemental strand, 222227 - 221886
Alignment:
58 actgcagagaattcctgaagtctttataacaatatatgggagcgaactcaagaatgttgctacaattactgtaccggatggtcttacttggaaattggaa 157  Q
    ||||||||||||||| || |  ||||||| || || |||||  ||||||||||||||||||||||||||||| || |||||   |  |||| || |||||    
222227 actgcagagaattccagatggatttataaaaagatttgggaatgaactcaagaatgttgctacaattactgttcccgatggctgtgattgggaaatggaa 222128  T
158 ttgaagaaacgtggggaggatgtttacttttgcaacaaatggaaacagtttgcagaatactattctttaagatacggttgcttcatgtctttcaaatatg 257  Q
     |||||||| | ||  | || ||||||||||||||||||||| ||||||||||||||||||||||| || | || |||| |||| ||  |||||||||||    
222127 ctgaagaaatgcggcaacgacgtttacttttgcaacaaatggcaacagtttgcagaatactattctatagggtatggttccttcttgcgtttcaaatatg 222028  T
258 aagggaattcaaagtttagtgttattatatttgatgcaacttctgttgaaagttcctatcctttcgaaacttcaagaactaatggagaaccaaaaacaaa 357  Q
    ||||| |||||||||||| |||| |||||||||||| |||||||||||| | || |||||| ||| |||||  ||| | |||||||||| |||| |||||    
222027 aaggggattcaaagtttaatgttgttatatttgatgtaacttctgttgagatttgctatccattcaaaactcaaagtattaatggagaaacaaacacaaa 221928  T
358 ttatcctagttctagaaaaaggtccaaggttgaaacatgtga 399  Q
     | || |||| |||| ||||||||||||||||||||| ||||    
221927 gtgtcatagtcctaggaaaaggtccaaggttgaaacaagtga 221886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 58 - 449
Target Start/End: Complemental strand, 197404 - 197013
Alignment:
58 actgcagagaattcctgaagtctttataacaatatatgggagcgaactcaagaatgttgctacaattactgtaccggatggtcttacttggaaattggaa 157  Q
    |||||||||||||||||||| |||||||||||| | |||||  |||||| |||| ||||||||| |||| || || ||||||| |  ||||||| ||  |    
197404 actgcagagaattcctgaagactttataacaatgtttgggaatgaactcgagaaagttgctacagttacagttcccgatggtcgtgattggaaaatgaga 197305  T
158 ttgaagaaacgtggggaggatgtttacttttgcaacaaatggaaacagtttgcagaatactattctttaagatacggttgcttcatgtctttcaaatatg 257  Q
    ||||||||||| ||  | ||  ||| ||||| |||| ||||| || |||| ||| |||||||||| ||| | || ||||||| | | ||||||||||| |    
197304 ttgaagaaacgcggcaatgacattttcttttccaacgaatgggaagagttcgcaaaatactattcattagggtatggttgctacctatctttcaaatacg 197205  T
258 aagggaattcaaagtttagtgttattatatttgatgcaacttctgttgaaagttcctatcctttcgaaacttcaagaactaatggagaaccaaaaacaaa 357  Q
    |||||||||||||||||||||||||||||||||| | ||||| |||||| | ||  ||||| ||  ||||| ||||   ||||||||||||||| |||||    
197204 aagggaattcaaagtttagtgttattatatttgacgtaacttatgttgagatttgttatccattaaaaactccaagtgttaatggagaaccaaacacaaa 197105  T
358 ttatcctagttctagaaaaaggtccaaggttgaaacatgtgagaggcttcggaaaaaggtcaaaaacatgtctaaatatgcttctaaaagag 449  Q
     | | ||||| |||  ||||||||||||||||||||| ||||| | | | ||||||||| ||||| | |||||||| ||||||||| |||||    
197104 atgtgctagtcctacgaaaaggtccaaggttgaaacaagtgagtgtcatgggaaaaaggccaaaagcgtgtctaaacatgcttctacaagag 197013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 58 - 394
Target Start/End: Original strand, 204789 - 205125
Alignment:
58 actgcagagaattcctgaagtctttataacaatatatgggagcgaactcaagaatgttgctacaattactgtaccggatggtcttacttggaaattggaa 157  Q
    ||||||||||||| | || |  |||||||||| || |||||  ||||||||||||||||||||| ||||||   | ||||||| |  ||||| | ||  |    
204789 actgcagagaatttcagatgagtttataacaagatttgggatagaactcaagaatgttgctacagttactgctactgatggtcgtgattggagaatgaga 204888  T
158 ttgaagaaacgtggggaggatgtttacttttgcaacaaatggaaacagtttgcagaatactattctttaagatacggttgcttcatgtctttcaaatatg 257  Q
    ||||||||||  ||  | ||  ||| ||||| |||| ||||| || |||||||| |||||||||| ||| |||  ||||||| | | ||||||||||| |    
204889 ttgaagaaacacggcaatgacattttcttttacaacgaatggcaagagtttgcaaaatactattcgttaggatgtggttgctacctatctttcaaatacg 204988  T
258 aagggaattcaaagtttagtgttattatatttgatgcaacttctgttgaaagttcctatcctttcgaaacttcaagaactaatggagaaccaaaaacaaa 357  Q
    |||| |||||||||||||||||| |||||||||||| |||||| ||||| | || ||||||  || ||||| | || |||||||||||| |||| ||| |    
204989 aaggaaattcaaagtttagtgttgttatatttgatgtaacttcggttgagatttgctatccactcaaaactccgagtactaatggagaaacaaatacaca 205088  T
358 ttatcctagttctagaaaaaggtccaaggttgaaaca 394  Q
     | ||||| | |||||||||| || | ||||||||||    
205089 atgtcctactcctagaaaaagttcaagggttgaaaca 205125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 351
Target Start/End: Complemental strand, 226403 - 226110
Alignment:
58 actgcagagaattcctgaagtctttataacaatatatgggagcgaactcaagaatgttgctacaattactgtaccggatggtcttacttggaaattggaa 157  Q
    ||||||||||||||| || |  |||||||||| || |||||  |||||| | ||||||||||| |||||||| || ||||||| |   |||||  |||||    
226403 actgcagagaattccagatgagtttataacaagatttgggaatgaactcgacaatgttgctaccattactgttcccgatggtcgtgagtggaatatggaa 226304  T
158 ttgaagaaacgtggggaggatgtttacttttgcaacaaatggaaacagtttgcagaatactattctttaagatacggttgcttcatgtctttcaaatatg 257  Q
     | |||||| |||| |   |  ||| |||||||||||| ||| ||||||||||||||||||||| | |    || ||||| |   |   |||||||||||    
226303 ctaaagaaatgtggcggccaaattttcttttgcaacaattggcaacagtttgcagaatactattgtatttattatggttgttatttagatttcaaatatg 226204  T
258 aagggaattcaaagtttagtgttattatatttgatgcaacttctgttgaaagttcctatcctttcgaaacttcaagaactaatggagaaccaaa 351  Q
    |||||||||||||||| | |||| ||||||  |||  |||||||||||| | ||| ||||| ||| |||||   || |||||||||||||||||    
226203 aagggaattcaaagttcaatgttgttatatacgatagaacttctgttgagatttcttatccattccaaactcggaggactaatggagaaccaaa 226110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 247 - 345
Target Start/End: Complemental strand, 198372 - 198274
Alignment:
247 tttcaaatatgaagggaattcaaagtttagtgttattatatttgatgcaacttctgttgaaagttcctatcctttcgaaacttcaagaactaatggaga 345  Q
    |||||| ||| |||||||||||||||||| |||| |||||| |||| ||||||||||||| | ||| ||| | ||| ||||| |||| |||||||||||    
198372 tttcaactatcaagggaattcaaagtttaatgttgttatatatgatacaacttctgttgagatttcttattcattcaaaactccaagtactaatggaga 198274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 345
Target Start/End: Original strand, 203516 - 203682
Alignment:
179 gtttacttttgcaacaaatggaaacagtttgcagaatactattctttaagatacggttgcttcatgtctttcaaatatgaagggaattcaaagtttagt- 277  Q
    |||| |||||||||||| ||| |||| |||||||||||||||||  | || |||||||| |   |   |||||| |||||||| |||||||| ||| ||     
203516 gttttcttttgcaacaattggcaacactttgcagaatactattccatcagttacggttgttatttagatttcaagtatgaaggaaattcaaa-tttcgta 203614  T
278 gttattatatttgatgcaacttctgttgaaagttcctatcctttcgaaacttcaagaactaatggaga 345  Q
    ||| |||||| |||| |||||| |||||| | ||| ||||| ||| |||||||||| |||||||||||    
203615 gttgttatatatgatccaacttttgttgagatttcttatccattcaaaacttcaagtactaatggaga 203682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 351
Target Start/End: Complemental strand, 211771 - 211667
Alignment:
247 tttcaaatatgaagggaattcaaagtttagtgttattatatttgatgcaacttctgttgaaagttcctatcctttcgaaacttcaagaactaatggagaa 346  Q
    ||||||||| ||||||||||||||||| | |||| ||||||  ||| ||||||||||||| | ||| ||||| ||| |||||   || ||||||||||||    
211771 tttcaaatacgaagggaattcaaagttcaatgttgttatatacgatacaacttctgttgagatttcttatccattccaaactcggaggactaatggagaa 211672  T
347 ccaaa 351  Q
     ||||    
211671 gcaaa 211667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 60 - 450
Target Start/End: Complemental strand, 29838555 - 29838165
Alignment:
60 tgcagagaattcctgaagtctttataacaatatatgggagcgaactcaagaatgttgctacaattactgtaccggatggtcttacttggaaattggaatt 159  Q
    ||||||||||||| || |  |||||||||| || ||| |  |||||||| |||||||||||||||||||| || ||||||| |   |||||| ||||| |    
29838555 tgcagagaattccagatgaatttataacaagatttggaaatgaactcaataatgttgctacaattactgttccagatggtcgtgtatggaaaatggaact 29838456  T
160 gaagaaacgtggggaggatgtttacttttgcaacaaatggaaacagtttgcagaatactattctttaagatacggttgcttcatgtctttcaaatatgaa 259  Q
    |||||||||||| ||| |||||| |||||||||||||||| || |||||| |||||| |||||| || |||| ||||||||||| |||||||||||||||    
29838455 gaagaaacgtggcgagaatgttttcttttgcaacaaatggcaagagtttgtagaatattattctataggatatggttgcttcatttctttcaaatatgaa 29838356  T
260 gggaattcaaagtttagtgttattatatttgatgcaacttctgttgaaagttcctatcctttcgaaacttcaagaactaatggagaaccaaaaacaaatt 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||    
29838355 gggaattcaaagtttagtgttattatatttgatgcaacttctgttgaaatttcctatcctttcgaaactccaagtactaatggagaaccaaaaacaaatt 29838256  T
360 atcctagttctagaaaaaggtccaaggttgaaacatgtgagaggcttcggaaaaaggtcaaaaacatgtctaaatatgcttctaaaagagt 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
29838255 atcctagttctagaaaaaggtccaaggttgaaacatgtgagaggcttcggaaaaaggtcaaaaacatgtctaaatatgcttctaaaagagt 29838165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 58 - 394
Target Start/End: Complemental strand, 6903704 - 6903368
Alignment:
58 actgcagagaattcctgaagtctttataacaatatatgggagcgaactcaagaatgttgctacaattactgtaccggatggtcttacttggaaattggaa 157  Q
    ||||||||||||| | || |  |||||||||| || |||||  ||||||||||||||||||||| ||||||  || ||||||| |  ||||| | ||  |    
6903704 actgcagagaatttcagatgagtttataacaagatttgggatagaactcaagaatgttgctacagttactgctcctgatggtcgtgattggagaatgaga 6903605  T
158 ttgaagaaacgtggggaggatgtttacttttgcaacaaatggaaacagtttgcagaatactattctttaagatacggttgcttcatgtctttcaaatatg 257  Q
    ||||||||||  ||  |  |  ||| ||||| |||| ||||| || |||||||| |||||||||| ||| |||| ||||||| | | ||||||||||| |    
6903604 ttgaagaaacacggcaattacattttcttttacaacgaatggcaagagtttgcaaaatactattcattaggatatggttgctacctatctttcaaatacg 6903505  T
258 aagggaattcaaagtttagtgttattatatttgatgcaacttctgttgaaagttcctatcctttcgaaacttcaagaactaatggagaaccaaaaacaaa 357  Q
    |||| ||||||||||||||||||||||||||||||| |||||| ||||| | || ||||||  || ||||| | || |||||||||||| |||| ||| |    
6903504 aaggaaattcaaagtttagtgttattatatttgatgtaacttcggttgagatttgctatccactcaaaactccgagtactaatggagaaacaaatacaca 6903405  T
358 ttatcctagttctagaaaaaggtccaaggttgaaaca 394  Q
     | ||||| | |||||||||| |||| ||||||||||    
6903404 atgtcctactcctagaaaaagttccagggttgaaaca 6903368  T

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Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 179 - 367
Target Start/End: Complemental strand, 3808532 - 3808343
Alignment:
179 gtttacttttgcaacaaatggaaacagtttgcagaatactattctttaagatacggttgcttcatgtctttcaaatatgaagggaattc-aaagtttagt 277  Q
    |||| |||||||||||||||| || ||||   ||||||||| ||  || |||| ||||| | | | |||||||| |||||||| ||||| ||||||||||    
3808532 gttttcttttgcaacaaatggcaagagttcatagaatactactcaataggatatggttggtacctttctttcaattatgaaggaaattccaaagtttagt 3808433  T
278 gttattatatttgatgcaacttctgttgaaagttcctatcctttcgaaacttcaagaactaatggagaaccaaaaacaaattatcctagt 367  Q
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3808432 gttattatatttgacgtaacttctgttgggatttgctatccgttcaaaactccaagtactaatagagaaccaaacacaaagtatcctagt 3808343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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