View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16275_high_9 (Length: 389)
Name: NF16275_high_9
Description: NF16275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16275_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 382
Target Start/End: Original strand, 39558742 - 39559107
Alignment:
| Q |
18 |
actctttcttaaattactaagcatcaaatgatcgcaagcannnnnnnacgttaacatttaaaactatagatgataaatactttttgataattcaaattta |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39558742 |
actctttcttaaattactaagcatcaaatgatcgcaaacatttttttacgttaacatttaaaactatagatgataaatactttttgataattcaaattta |
39558841 |
T |
|
| Q |
118 |
atactaacggattcatgattgcatggaatctctttggagtaaatgttggacaaattattaacaaccttatgttacagatgaaatattaaatattttgtta |
217 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39558842 |
ataataacagattcatgattgcatggaatctctttggagtaaatgttggacaaattattaacaaccttatgttacagatgaaatattaaatattttgtta |
39558941 |
T |
|
| Q |
218 |
accttatacaacaaattccca-catcctcacctctatctattatgccccactatatatgtataataaaaatagaagatccatgcaaagggtgattgagat |
316 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39558942 |
accttatacaacaaattcccaccatcctcacctctatctattatgccccactatatatgtataataaaaatagaagatccatgcaaagggtgattgagat |
39559041 |
T |
|
| Q |
317 |
gtagcattttgttttctaccatgatgacatgtacactttgattgattagatcatgtgtctggccta |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39559042 |
gtagcattttgttttctaccatgatgacatgtacactttgattgattagatcatgtgtctggccta |
39559107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University