View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16275_low_11 (Length: 373)
Name: NF16275_low_11
Description: NF16275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16275_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 10 - 356
Target Start/End: Original strand, 51383337 - 51383683
Alignment:
| Q |
10 |
aagaaggactttaaacattaacactctaaattctgcaaggatcaacgaggctatttatcataataattatttaacaacagatatagtgtatctaaagaat |
109 |
Q |
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| T |
51383337 |
aagaaggactttaaacattaacactctaaattctgcaaggatcaacgaggctatttatcataataattatttaacaacagatatagtgtatctaaagaat |
51383436 |
T |
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| Q |
110 |
tatcttgatgcacaatattttggtgagattggtattgggacacctccacaaatcttcaaagttgtgtttgatactggaagctccaatctttgggtcccat |
209 |
Q |
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| T |
51383437 |
tatcttgatgcacaatattttggtgagattggtattgggacacctccacaaatcttcaaagttgtgtttgatactggaagctccaatctttggatcccat |
51383536 |
T |
|
| Q |
210 |
cttccaaatgcaaattatctgtaagtttcacaatgatctaattaaacactcctacagatatgcttttatttagccaagcttatttcaaaatcaatatatg |
309 |
Q |
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| T |
51383537 |
cttccaaatgcaaattatctgtaagtttcacaatgatctaattaaacactccttcagatatgcttttatttagccaagcttatttcaaaatcaatatatg |
51383636 |
T |
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| Q |
310 |
actaatttgagtataactaaatgcagattgcttgctacattcattcc |
356 |
Q |
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| T |
51383637 |
actaatttgagtataactaaatacagattgcttgctacattcattcc |
51383683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 213 - 356
Target Start/End: Original strand, 5170515 - 5170658
Alignment:
| Q |
213 |
ccaaatgcaaattatctgtaagtttcacaatgatctaattaaacactcctacagatatgcttttatttagccaagcttatttcaaaatcaatatatgact |
312 |
Q |
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| T |
5170515 |
ccaaatgcagattgtcggtaagattcacaatgatctaatcaaacactactccagatatgcttttattttaccaagcctatttcaaaatcaatatatgatt |
5170614 |
T |
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| Q |
313 |
aatttgagtataactaaatgcagattgcttgctacattcattcc |
356 |
Q |
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| T |
5170615 |
aatttaagtataactaaatgcaaattgcttgctacattcattcc |
5170658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 213 - 356
Target Start/End: Original strand, 48762793 - 48762936
Alignment:
| Q |
213 |
ccaaatgcaaattatctgtaagtttcacaatgatctaattaaacactcctacagatatgcttttatttagccaagcttatttcaaaatcaatatatgact |
312 |
Q |
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| T |
48762793 |
ccaaatgcagattgtcggtaagattcacaatgatctaatcaaacactactccagatatgcttttattttaccaagcctatttcaaaatcaatatatgatt |
48762892 |
T |
|
| Q |
313 |
aatttgagtataactaaatgcagattgcttgctacattcattcc |
356 |
Q |
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| T |
48762893 |
aatttaagtataactaaatgcaaattgcttgctacattcattcc |
48762936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 214 - 356
Target Start/End: Original strand, 41752130 - 41752272
Alignment:
| Q |
214 |
caaatgcaaattatctgtaagtttcacaatgatctaattaaacactcctacagatatgcttttatttagccaagcttatttcaaaatcaatatatgacta |
313 |
Q |
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|||||||| ||| || ||||| |||||||||||||||| ||||||| || ||||||||||||||||| |||| | ||||||||||||||||||||| || |
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| T |
41752130 |
caaatgcagattgtcggtaagattcacaatgatctaatcaaacactactccagatatgcttttattttaccaaacctatttcaaaatcaatatatgatta |
41752229 |
T |
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| Q |
314 |
atttgagtataactaaatgcagattgcttgctacattcattcc |
356 |
Q |
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|||| ||||||||||||| || ||||||||||||||||||||| |
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| T |
41752230 |
atttaagtataactaaatacaaattgcttgctacattcattcc |
41752272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 98 - 221
Target Start/End: Complemental strand, 19942784 - 19942661
Alignment:
| Q |
98 |
tatctaaagaattatcttgatgcacaatattttggtgagattggtattgggacacctccacaaatcttcaaagttgtgtttgatactggaagctccaatc |
197 |
Q |
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||||| |||||||| |||||| |||||||| ||| || ||||||||||| |||| ||||| ||||| ||||||||||| ||||| ||||| |||| |
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| T |
19942784 |
tatcttaagaattactttgatgtacaatattatggggaaattggtattggttcaccaccacagtatttcaatgttgtgtttgacactggtagctctaatc |
19942685 |
T |
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| Q |
198 |
tttgggtcccatcttccaaatgca |
221 |
Q |
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||||||| |||||||||| ||||| |
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| T |
19942684 |
tttgggttccatcttccagatgca |
19942661 |
T |
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