View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16275_low_13 (Length: 361)
Name: NF16275_low_13
Description: NF16275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16275_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 89 - 325
Target Start/End: Complemental strand, 5764752 - 5764516
Alignment:
| Q |
89 |
atcttcctccccttgtccctctctcctgcaactcgtcggaacaatctccaaaacacggtcgtttgtgtccgtctctcctgcaactcgtcggaaacaacct |
188 |
Q |
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| T |
5764752 |
atcttcctccccttgtccctctctcctgcaactcgtcggaacaatctccaaaacacggtcgtttgtgtccctatctcctgcaactcgtcggaaacaacct |
5764653 |
T |
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| Q |
189 |
ccaaaacatggagaaggtggccgcgaaacccgcattctctaaacgcgccgctttagagcgttataacgtcgtggttcaattttggccgctccgcgccagg |
288 |
Q |
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| T |
5764652 |
ccaaaacatggagaaggtggccgcgaaacccgcattctctaaacgcgccgctttagagcgttataacgtcgtggttcaattttggccgctccgcgccagg |
5764553 |
T |
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| Q |
289 |
agcggccgctattgacaacatagatatcttcaactgt |
325 |
Q |
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| T |
5764552 |
agcggccgctattgacaacatagatatcttcaactgt |
5764516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 21285903 - 21285943
Alignment:
| Q |
7 |
gtgggttagagctgttctgtccagccattcatgtgctaaaa |
47 |
Q |
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| T |
21285903 |
gtgggttacagctgttctcttcagccattcatgtgctaaaa |
21285943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 306
Target Start/End: Complemental strand, 21472719 - 21472681
Alignment:
| Q |
268 |
ttttggccgctccgcgccaggagcggccgctattgacaa |
306 |
Q |
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| T |
21472719 |
ttttggccgctccgcgccagtagcggccgctattgacaa |
21472681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 301
Target Start/End: Complemental strand, 24792345 - 24792303
Alignment:
| Q |
259 |
gtggttcaattttggccgctccgcgccaggagcggccgctatt |
301 |
Q |
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| T |
24792345 |
gtggttcatttttggccgctccgcgccgggagcggccgctatt |
24792303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 44966460 - 44966500
Alignment:
| Q |
268 |
ttttggccgctccgcgccaggagcggccgctattgacaaca |
308 |
Q |
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| T |
44966460 |
ttttggccgctccgcgccgggagcggccgcgtttgacaaca |
44966500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 325957 - 326002
Alignment:
| Q |
268 |
ttttggccgctccgcgccaggagcggccgctattgacaacatagat |
313 |
Q |
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| T |
325957 |
ttttggccgctccgcgccgggagcggccgctattaacaacagagat |
326002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 125469 - 125408
Alignment:
| Q |
136 |
ccaaaacacggtcgtttg-tgtccgtctctcctgcaactcgtcggaaacaacctccaaaaca |
196 |
Q |
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|||||| |||| |||||| ||||| | ||||| |||||||| |||||||||||||||||||| |
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| T |
125469 |
ccaaaaaacggccgtttggtgtccctttctccggcaactcgccggaaacaacctccaaaaca |
125408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 11057218 - 11057258
Alignment:
| Q |
268 |
ttttggccgctccgcgccaggagcggccgctattgacaaca |
308 |
Q |
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| T |
11057218 |
ttttggccgctccgcgccgggagcggccgctattaacaaca |
11057258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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