View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16275_low_16 (Length: 330)
Name: NF16275_low_16
Description: NF16275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16275_low_16 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 2623442 - 2623748
Alignment:
| Q |
11 |
gatgaaatagaaggttacaaagctaaaaagttaataggaaaaattgaattttgtgatgtatattttgcatatccgtctagacctaatgtgatgatttttc |
110 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2623442 |
gatgaaatagaaggtcacaaagctataaagttaataggaaaaattgaattttgtgatgtatattttgcatatccgtctagacctaatgtgatgatttttc |
2623541 |
T |
|
| Q |
111 |
aaggattctcgattaaaattgatgctggaaaatcgacaggtttgatgggggaaagtggttctgggaaatcaacgatcataggactaattgagaggttcta |
210 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||| | || | ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2623542 |
aaggattttcgattaaatttgatgctggaaaatcgacagctctggtagggaaaagtggttctgggaaatcaacgatcataggactaattgagaggttcta |
2623641 |
T |
|
| Q |
211 |
tgattctcttcaagggatagtgacaattgacggaagggacataaaaacttataatataaggtcattaaggaaacacattgcactcgtgagtcaagaacca |
310 |
Q |
| |
|
|||| | ||| ||||||||||||||||||| || || |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
2623642 |
tgatccacttgaagggatagtgacaattgatggcagagacataaaaacttataatctaaggtcattaaggaaacacattgcacttgtgagtcaagaacca |
2623741 |
T |
|
| Q |
311 |
acattgt |
317 |
Q |
| |
|
||||||| |
|
|
| T |
2623742 |
acattgt |
2623748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 2591898 - 2592204
Alignment:
| Q |
11 |
gatgaaatagaaggttacaaagctaaaaagttaataggaaaaattgaattttgtgatgtatattttgcatatccgtctagacctaatgtgatgatttttc |
110 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
2591898 |
gatgaaatagaaggttacaaagctgaaaagttaataggaaaaattgaattttgtgatgtttattttgcatatccgtctagaccaaatgtgatgatttttg |
2591997 |
T |
|
| Q |
111 |
aaggattctcgattaaaattgatgctggaaaatcgacaggtttgatgggggaaagtggttctgggaaatcaacgatcataggactaattgagaggttcta |
210 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||| ||| | || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2591998 |
aaggattctcgattaaaattgatgccggaaaatcaacagcgttggtaggagaaagtggttctgggaaatcaacgatcataggactaattgagaggttcta |
2592097 |
T |
|
| Q |
211 |
tgattctcttcaagggatagtgacaattgacggaagggacataaaaacttataatataaggtcattaaggaaacacattgcactcgtgagtcaagaacca |
310 |
Q |
| |
|
|||| | ||| ||||||||||||||||||| || ||||||||||||| ||||||| |||||||| ||||||||||||||||||| ||||||||||||||| |
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|
| T |
2592098 |
tgatccacttaaagggatagtgacaattgatggtagggacataaaaatttataatctaaggtcactaaggaaacacattgcacttgtgagtcaagaacca |
2592197 |
T |
|
| Q |
311 |
acattgt |
317 |
Q |
| |
|
||||||| |
|
|
| T |
2592198 |
acattgt |
2592204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 22 - 317
Target Start/End: Complemental strand, 2569361 - 2569066
Alignment:
| Q |
22 |
aggttacaaagctaaaaagttaataggaaaaattgaattttgtgatgtatattttgcatatccgtctagacctaatgtgatgatttttcaaggattctcg |
121 |
Q |
| |
|
||||||||||||| |||| |||||||||| ||||||| ||| ||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||| |
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|
| T |
2569361 |
aggttacaaagctgaaaaattaataggaataattgaactttttgatgtacattttgcatatccggctagacctaatgtgatgatttttcaagggttctcg |
2569262 |
T |
|
| Q |
122 |
attaaaattgatgctggaaaatcgacaggtttgatgggggaaagtggttctgggaaatcaacgatcataggactaattgagaggttctatgattctcttc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| | ||||||||||||||||| |||||||| ||||||||||| ||||| || ||||||||| | ||| |
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|
| T |
2569261 |
attaaaattgatgctggaaaatcgacagctttggtaggggaaagtggttctggaaaatcaacaatcataggacttattgaaagattctatgatccactta |
2569162 |
T |
|
| Q |
222 |
aagggatagtgacaattgacggaagggacataaaaacttataatataaggtcattaaggaaacacattgcactcgtgagtcaagaaccaacattgt |
317 |
Q |
| |
|
||||||||||||||||||| || || |||||||| || |||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2569161 |
aagggatagtgacaattgatggtagagacataaagacatataatctaaggtcattaagggaacacattgcacttgtgagtcaagaaccaacattgt |
2569066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 2672740 - 2672441
Alignment:
| Q |
18 |
tagaaggttacaaagctaaaaagttaataggaaaaattgaattttgtgatgtatattttgcatatccgtctagacctaatgtgatgatttttcaaggatt |
117 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||||||||||||| || |||||||||||||| ||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
2672740 |
tagaaagttaccaagctgaaaagttaataggaaaaattgaacttcgtgatgtatatttttcatatccagctagacctaatgttatgatttttcaaggatt |
2672641 |
T |
|
| Q |
118 |
ctcgattaaaattgatgctggaaaatcgacaggtttgatgggggaaagtggttctgggaaatcaacgatcataggactaattgagaggttctatgattct |
217 |
Q |
| |
|
|||||||||||||||||| |||||||| || | |||| | ||||||||||||||||| ||||| || |||||||||||||||||||| |||||||| | |
|
|
| T |
2672640 |
ctcgattaaaattgatgcaggaaaatcaacggctttggtaggggaaagtggttctggaaaatcgacaatcataggactaattgagagattctatgaccca |
2672541 |
T |
|
| Q |
218 |
cttcaagggatagtgacaattgacggaagggacataaaaacttataatataaggtcattaaggaaacacattgcactcgtgagtcaagaaccaacattgt |
317 |
Q |
| |
|
||| |||||||||||||||||||||| || |||||||| || |||||| | |||||||| |||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
2672540 |
cttaaagggatagtgacaattgacggtagagacataaagacatataatctcaggtcattgaggaaacacattgcccttgtgagtcaagaaccaacattgt |
2672441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 2596924 - 2596625
Alignment:
| Q |
18 |
tagaaggttacaaagctaaaaagttaataggaaaaattgaattttgtgatgtatattttgcatatccgtctagacctaatgtgatgatttttcaaggatt |
117 |
Q |
| |
|
|||||||||||| |||| |||| |||||||||||||||||| || |||||||||||||||||||||| |||||||||||| | ||||||||||| || |
|
|
| T |
2596924 |
tagaaggttacagagctgaaaaattaataggaaaaattgaacttcgtgatgtatattttgcatatccaggtagacctaatgttacaatttttcaagggtt |
2596825 |
T |
|
| Q |
118 |
ctcgattaaaattgatgctggaaaatcgacaggtttgatgggggaaagtggttctgggaaatcaacgatcataggactaattgagaggttctatgattct |
217 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | |||| | ||||||||||||||||| ||||| || || ||||||||||||||||| ||||||||| | |
|
|
| T |
2596824 |
ctcgattaaaattgatgcaggaaaatcgacggctttggtaggggaaagtggttctggaaaatcgacaattataggactaattgagagattctatgatcca |
2596725 |
T |
|
| Q |
218 |
cttcaagggatagtgacaattgacggaagggacataaaaacttataatataaggtcattaaggaaacacattgcactcgtgagtcaagaaccaacattgt |
317 |
Q |
| |
|
|| |||||||||||||||||||||| || |||||||| || |||||| || | |||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
2596724 |
tttaaagggatagtgacaattgacggtagagacataaagacatataatctacgatcattaaggaaacatattgcacttgtgagtcaagaaccaacattgt |
2596625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 20 - 313
Target Start/End: Complemental strand, 2641578 - 2641285
Alignment:
| Q |
20 |
gaaggttacaaagctaaaaagttaataggaaaaattgaattttgtgatgtatattttgcatatccgtctagacctaatgtgatgatttttcaaggattct |
119 |
Q |
| |
|
|||||||||||||| ||||| || ||||| ||||||||| || ||||||| |||||||||||||| |||||||||||||||||| |||||||| |||| |
|
|
| T |
2641578 |
gaaggttacaaagccaaaaatttgatagggaaaattgaacttcttgatgtagattttgcatatccgggtagacctaatgtgatgatctttcaagggttct |
2641479 |
T |
|
| Q |
120 |
cgattaaaattgatgctggaaaatcgacaggtttgatgggggaaagtggttctgggaaatcaacgatcataggactaattgagaggttctatgattctct |
219 |
Q |
| |
|
| |||||||| || |||||||||||||| | |||| | |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| | | |
|
|
| T |
2641478 |
caattaaaatcgacgctggaaaatcgacggctttggtcggggaaagtggttcagggaaatcaacaatcataggactaattgagagattctatgatccaat |
2641379 |
T |
|
| Q |
220 |
tcaagggatagtgacaattgacggaagggacataaaaacttataatataaggtcattaaggaaacacattgcactcgtgagtcaagaaccaaca |
313 |
Q |
| |
|
| ||||||||||||||||||| || || ||||| |||||||| ||||||| |||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
2641378 |
taaagggatagtgacaattgatggtgaagatataaagtcttataatctaaggtcgttaaggaaacacattgcacttgtaagtcaagaaccaaca |
2641285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 2439959 - 2440258
Alignment:
| Q |
18 |
tagaaggttacaaagctaaaaagttaataggaaaaattgaattttgtgatgtatattttgcatatccgtctagacctaatgtgatgatttttcaaggatt |
117 |
Q |
| |
|
||||||||| || |||| ||||||| ||||||||||||| |||| ||| ||| ||||| |||||||| |||| |||||||||||| | |||||||| || |
|
|
| T |
2439959 |
tagaaggtttcagagctgaaaagttgataggaaaaattgtatttcatgacgtacatttttcatatccggctaggcctaatgtgatggtctttcaagggtt |
2440058 |
T |
|
| Q |
118 |
ctcgattaaaattgatgctggaaaatcgacaggtttgatgggggaaagtggttctgggaaatcaacgatcataggactaattgagaggttctatgattct |
217 |
Q |
| |
|
||| ||| ||||||| || |||||||| || | |||| | ||||||||||||||||| ||||| || |||||||||||||||||||| ||||||||| | |
|
|
| T |
2440059 |
ctctattgaaattgacgccggaaaatcaacggctttggttggggaaagtggttctggaaaatcgacaatcataggactaattgagagattctatgatcca |
2440158 |
T |
|
| Q |
218 |
cttcaagggatagtgacaattgacggaagggacataaaaacttataatataaggtcattaaggaaacacattgcactcgtgagtcaagaaccaacattgt |
317 |
Q |
| |
|
||| |||||||||||||| |||| || || |||||||||||||||||| || | |||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
2440159 |
cttaaagggatagtgacagttgatggtagagacataaaaacttataatctacgatcattaaggaaacatattgcacttgtgagtcaagaaccaacattgt |
2440258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 20 - 317
Target Start/End: Original strand, 2450686 - 2450983
Alignment:
| Q |
20 |
gaaggttacaaagctaaaaagttaataggaaaaattgaattttgtgatgtatattttgcatatccgtctagacctaatgtgatgatttttcaaggattct |
119 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||| ||||||| ||||||||||||||||||| ||||||| || || |||||||| |||| |
|
|
| T |
2450686 |
gaaggttacaaagtagaaaagttgataggaaaaattgaatttcatgatgtacattttgcatatccgtctaggcctaatgcaatcatctttcaagggttct |
2450785 |
T |
|
| Q |
120 |
cgattaaaattgatgctggaaaatcgacaggtttgatgggggaaagtggttctgggaaatcaacgatcataggactaattgagaggttctatgattctct |
219 |
Q |
| |
|
||||||||||| ||| || ||||| || | |||| | ||||||||||||||||| ||||| || |||||||||||||||||||| || |||||| | | |
|
|
| T |
2450786 |
cgattaaaattaatgtcggtaaatcaacggctttggtcggggaaagtggttctggaaaatcgacaatcataggactaattgagagattttatgatccaat |
2450885 |
T |
|
| Q |
220 |
tcaagggatagtgacaattgacggaagggacataaaaacttataatataaggtcattaaggaaacacattgcactcgtgagtcaagaaccaacattgt |
317 |
Q |
| |
|
||||||||||||| ||||| || || || ||||| |||||||| |||||||||||||||| || ||| |||| ||||||||||| |||||||||| |
|
|
| T |
2450886 |
aaaagggatagtgacgattgatggtagtgatataaagtcttataatctaaggtcattaaggaagcatatttcacttgtgagtcaagagccaacattgt |
2450983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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