View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16275_low_18 (Length: 298)
Name: NF16275_low_18
Description: NF16275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16275_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 4 - 279
Target Start/End: Original strand, 44901000 - 44901275
Alignment:
| Q |
4 |
ggagcagcacagaagagggaacaggtggcaaatcaccaagatcatcacaacacaagaaaaccggtttaaataacttcaaaactagaaaggcttattttta |
103 |
Q |
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| T |
44901000 |
ggagcaccatagaagagggaacaggtggcaaatcaccaagatcatcacaacgcaagaaaaccggtttaaataacttcaaaactagaaaggcttattttta |
44901099 |
T |
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| Q |
104 |
ttgggtggcggcgaaacaaggtttctttgattggtttaaagatgtaatgaatgaggtggtggaagaagaccgtaggagagtaattgagatccacagtcac |
203 |
Q |
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| T |
44901100 |
ttgggtggcggcgaaacaaggtttctttgattggtttaaagatgtaatgaatgaggtggtggaagaagaccgtaggagagtaattgagatccacagtcac |
44901199 |
T |
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| Q |
204 |
ttgactagtgtatatgaagacggtgatgctcaatctactcttattgctatgcttcaatcactaaaccatgctaaaa |
279 |
Q |
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| T |
44901200 |
ttgactagtgtatatgaagacggtgatgctcaatctgctcttattgctatgcttcaatcactaaaccatgctaaaa |
44901275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 44892361 - 44892621
Alignment:
| Q |
18 |
gagggaacaggtggcaaatcaccaagatcatcacaacacaagaaaaccggtttaaataacttcaaaactagaaaggcttatttttattgggtggcggcga |
117 |
Q |
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| T |
44892361 |
gagggaacaattggtaaatcatcaagaccatcagaacacaagaaaactgatttgagtaactttaaaactagaaaggcttatttttactggatggctggtg |
44892460 |
T |
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| Q |
118 |
aacaaggtttctttgattggtttaaagatgtaatgaatgaggtggtggaagaagaccgtaggagagtaattgagatccacagtcacttgactagtgtata |
217 |
Q |
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| T |
44892461 |
aacaaggtttctttgattggtttaaaggggtaataaatgaggtggctgaagaggatcacaagaaagtaattgagatacacagtcacttgactagtgtata |
44892560 |
T |
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| Q |
218 |
tgaagacggtgatgctcaatctactcttattgctatgcttcaatcactaaaccatgctaaa |
278 |
Q |
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| T |
44892561 |
tgaagacggtgatgctcgctctgctcttgttactgtccttcaatcactaaaccatgctaaa |
44892621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 44917764 - 44918025
Alignment:
| Q |
18 |
gagggaacaggtggcaaatcaccaagatcatcacaacacaagaaaaccggtttaaataacttcaaaactagaaaggcttatttttattgggtggcggcga |
117 |
Q |
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| T |
44917764 |
gagggaacaagtagtaaatcaccgagaccatcacaacacaagagaaccggtttgaatagctttaaaactaagagggcttatttttactgggttactagag |
44917863 |
T |
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| Q |
118 |
aacaaggtttctttgattggtttaaagatgtaatgaatgaggtggtggaagaagaccgtaggagagtaattgagatccacagtcacttgactagtgtata |
217 |
Q |
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| T |
44917864 |
aacagggttcatttgattggtttaaaggagtaatgaatgaggtggctgaagatgatcataggggagtaattgagctacacaattattgtactagtgttta |
44917963 |
T |
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| Q |
218 |
tgaagacggtgatgctcaatctactcttattgctatgcttcaatcactaaaccatgctaaaa |
279 |
Q |
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| T |
44917964 |
tgaagagggtgatgctcgctctgctcttattgctatgctccaatcacttaatcatgctaaaa |
44918025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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