View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16275_low_2 (Length: 510)

Name: NF16275_low_2
Description: NF16275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16275_low_2
NF16275_low_2
[»] chr7 (7 HSPs)
chr7 (17-407)||(48669402-48669795)
chr7 (444-499)||(47719697-47719752)
chr7 (450-499)||(14305100-14305149)
chr7 (443-499)||(48669803-48669859)
chr7 (450-496)||(13785589-13785635)
chr7 (450-488)||(24389620-24389658)
chr7 (450-490)||(3688394-3688434)
[»] chr2 (8 HSPs)
chr2 (444-497)||(36238724-36238777)
chr2 (444-499)||(29513139-29513194)
chr2 (450-499)||(16692966-16693015)
chr2 (450-482)||(20432377-20432409)
chr2 (444-499)||(40252027-40252082)
chr2 (444-498)||(11750262-11750316)
chr2 (450-499)||(15902874-15902923)
chr2 (450-482)||(36237642-36237674)
[»] chr5 (9 HSPs)
chr5 (444-499)||(1281840-1281895)
chr5 (444-499)||(2313951-2314006)
chr5 (450-499)||(1283492-1283541)
chr5 (450-496)||(19128780-19128826)
chr5 (450-488)||(29087935-29087973)
chr5 (444-488)||(235596-235640)
chr5 (450-490)||(7632105-7632145)
chr5 (451-499)||(9407261-9407309)
chr5 (444-488)||(22212982-22213026)
[»] chr4 (9 HSPs)
chr4 (450-499)||(55976177-55976226)
chr4 (444-499)||(24551916-24551971)
chr4 (444-499)||(55000692-55000747)
chr4 (452-499)||(55976948-55976995)
chr4 (444-498)||(20774174-20774228)
chr4 (450-487)||(9365821-9365858)
chr4 (450-499)||(19550297-19550346)
chr4 (444-496)||(24158816-24158868)
chr4 (444-488)||(30573713-30573757)
[»] chr3 (12 HSPs)
chr3 (450-499)||(17603179-17603228)
chr3 (451-499)||(17603954-17604002)
chr3 (450-499)||(21727522-21727571)
chr3 (444-497)||(46149634-46149687)
chr3 (444-499)||(11654022-11654077)
chr3 (280-319)||(46786689-46786728)
chr3 (450-496)||(48648214-48648260)
chr3 (450-498)||(265092-265140)
chr3 (450-482)||(40872818-40872850)
chr3 (444-496)||(48649169-48649221)
chr3 (444-496)||(48765066-48765118)
chr3 (450-482)||(52282422-52282454)
[»] chr1 (9 HSPs)
chr1 (444-499)||(24991974-24992029)
chr1 (451-499)||(24992737-24992785)
chr1 (444-488)||(25468514-25468558)
chr1 (450-498)||(30663368-30663416)
chr1 (280-319)||(34454164-34454203)
chr1 (444-499)||(47967866-47967921)
chr1 (450-496)||(25469082-25469128)
chr1 (450-491)||(28182073-28182114)
chr1 (450-482)||(45818031-45818063)
[»] chr8 (4 HSPs)
chr8 (450-499)||(32414516-32414565)
chr8 (443-499)||(28929849-28929905)
chr8 (450-496)||(38628261-38628307)
chr8 (444-496)||(31641516-31641568)
[»] scaffold2007 (1 HSPs)
scaffold2007 (444-498)||(755-809)
[»] chr6 (2 HSPs)
chr6 (444-498)||(8488473-8488527)
chr6 (450-490)||(19311828-19311868)


Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 407
Target Start/End: Original strand, 48669402 - 48669795
Alignment:
Q  17 tacaaaaccacccttctcaggacgcacaatcagatacctcctccactccgaatccatcacttcacatgcaaatggttggtttagtctgaaaagaaaagaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48669402 tacaaaaccacccttctcaggacgcacaatcagatacctcctccactccgaatccatcacttcacatgcaaatggttggtttagtctgaaaagaaaagaa 48669501  T
Q  117 agagaggtttatgttacgtgtgtgatggaacagaactgaatagtatgattcttcaggtggcaagcaaggtaacgaaccaattaatatactctttcctctc 216  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48669502 agagaggtttacgttacgtgtgtgatggaacagaacagaatagtatgattcttcaggtggcaagcaaggtaacgaaccaattaatatactctttcctctc 48669601  T
Q  217 actttcttcactctatact-ccatttgcttttcgatttccaacacaaataaaacaaata-tttccaattgtaggttcgccttaggccaccaaaatctcat 314  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||    
T  48669602 actttcttcactctatactcccatttgcttttcgatttccaacacaaataaaacaaatattttcaaattgtaggttcgccttaggccaccaaaatcttat 48669701  T
Q  315 aaac-gtcatgcgtccaaaaagatttaaactccatccaccttttacctttgaacaaaaagatccattattttagtccatccttataaaatctat 407  Q
    |||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||| ||||||||    
T  48669702 aaacggccctgcgtccaaaaagatttaaactccatccaccttttacctttgaacaaaaagttccattcttttagtccatcattattaaatctat 48669795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 444 - 499
Target Start/End: Complemental strand, 47719752 - 47719697
Alignment:
Q  444 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 499  Q
    |||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  47719752 gatccattgacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcat 47719697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 499
Target Start/End: Original strand, 14305100 - 14305149
Alignment:
Q  450 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 499  Q
    ||||||| |||| |||||||||||||||||||| ||||||||||||||||    
T  14305100 ttgacactaggtgtcaacggattcattgacaccaaatcttaaacgttcat 14305149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 443 - 499
Target Start/End: Original strand, 48669803 - 48669859
Alignment:
Q  443 agatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 499  Q
    ||||| ||||||||||||| |||||| |||||||  |||| ||||||||||||||||    
T  48669803 agatccattgacaccaggtgtcaacgaattcattaccaccaaatcttaaacgttcat 48669859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 496
Target Start/End: Complemental strand, 13785635 - 13785589
Alignment:
Q  450 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgtt 496  Q
    |||||||||||| ||||||||||| |||||||| |||||||| ||||    
T  13785635 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaagcgtt 13785589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 488
Target Start/End: Complemental strand, 24389658 - 24389620
Alignment:
Q  450 ttgacaccaggtatcaacggattcattgacacctaatct 488  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  24389658 ttgacaccaggtgtcaacggattcattgacaccaaatct 24389620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 490
Target Start/End: Original strand, 3688394 - 3688434
Alignment:
Q  450 ttgacaccaggtatcaacggattcattgacacctaatctta 490  Q
    |||||||||| ||||||||||||| |||||||| |||||||    
T  3688394 ttgacaccagatatcaacggattcgttgacaccaaatctta 3688434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 444 - 497
Target Start/End: Complemental strand, 36238777 - 36238724
Alignment:
Q  444 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttc 497  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36238777 gatccattgacaccaggtatcaacggattcattgacaccaaatcttaaacgttc 36238724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 444 - 499
Target Start/End: Complemental strand, 29513194 - 29513139
Alignment:
Q  444 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 499  Q
    |||| ||||||||||||| ||||||||||| |||||||| |||||| |||||||||    
T  29513194 gatccattgacaccaggtgtcaacggattcgttgacaccaaatcttgaacgttcat 29513139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 450 - 499
Target Start/End: Complemental strand, 16693015 - 16692966
Alignment:
Q  450 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 499  Q
    |||||||||||| ||||||||||| |||||||| |||||||| |||||||    
T  16693015 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaagcgttcat 16692966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 482
Target Start/End: Complemental strand, 20432409 - 20432377
Alignment:
Q  450 ttgacaccaggtatcaacggattcattgacacc 482  Q
    |||||||||||||||||||||||||||||||||    
T  20432409 ttgacaccaggtatcaacggattcattgacacc 20432377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 499
Target Start/End: Original strand, 40252027 - 40252082
Alignment:
Q  444 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 499  Q
    |||| ||| ||||||||| ||||||||||| |||||||| |||| |||||||||||    
T  40252027 gatccattaacaccaggtgtcaacggattcgttgacaccaaatcctaaacgttcat 40252082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 498
Target Start/End: Original strand, 11750262 - 11750316
Alignment:
Q  444 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttca 498  Q
    |||| ||||||||||||| ||||||||||| |||||||| ||||| || ||||||    
T  11750262 gatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgttca 11750316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 499
Target Start/End: Complemental strand, 15902923 - 15902874
Alignment:
Q  450 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 499  Q
    |||||||||||| ||||||||||| |||||||  |||||||| |||||||    
T  15902923 ttgacaccaggtgtcaacggattcgttgacacaaaatcttaagcgttcat 15902874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 482
Target Start/End: Original strand, 36237642 - 36237674
Alignment:
Q  450 ttgacaccaggtatcaacggattcattgacacc 482  Q
    |||||||||||| ||||||||||||||||||||    
T  36237642 ttgacaccaggtgtcaacggattcattgacacc 36237674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 444 - 499
Target Start/End: Original strand, 1281840 - 1281895
Alignment:
Q  444 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 499  Q
    |||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  1281840 gatccattgacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcat 1281895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 444 - 499
Target Start/End: Original strand, 2313951 - 2314006
Alignment:
Q  444 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 499  Q
    |||| ||||||||||||| ||||| |||||||||||||| ||||||||||||||||    
T  2313951 gatccattgacaccaggtgtcaacagattcattgacaccaaatcttaaacgttcat 2314006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 499
Target Start/End: Complemental strand, 1283541 - 1283492
Alignment:
Q  450 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 499  Q
    |||||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  1283541 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcat 1283492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 496
Target Start/End: Original strand, 19128780 - 19128826
Alignment:
Q  450 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgtt 496  Q
    |||||||||||| ||||||||||| |||||||| |||||||| ||||    
T  19128780 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaaccgtt 19128826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 488
Target Start/End: Original strand, 29087935 - 29087973
Alignment:
Q  450 ttgacaccaggtatcaacggattcattgacacctaatct 488  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  29087935 ttgacaccaggtgtcaacggattcattgacaccaaatct 29087973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 488
Target Start/End: Original strand, 235596 - 235640
Alignment:
Q  444 gatcaattgacaccaggtatcaacggattcattgacacctaatct 488  Q
    |||| ||||||||||||| ||||||||||| |||||||| |||||    
T  235596 gatccattgacaccaggtgtcaacggattcgttgacaccaaatct 235640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 490
Target Start/End: Original strand, 7632105 - 7632145
Alignment:
Q  450 ttgacaccaggtatcaacggattcattgacacctaatctta 490  Q
    |||||||||||| ||||||||||| |||||||| |||||||    
T  7632105 ttgacaccaggtgtcaacggattcgttgacaccaaatctta 7632145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 451 - 499
Target Start/End: Original strand, 9407261 - 9407309
Alignment:
Q  451 tgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 499  Q
    |||||||| || ||||||||||| |||||||| |||||||| |||||||    
T  9407261 tgacaccaagtgtcaacggattcgttgacaccaaatcttaagcgttcat 9407309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 488
Target Start/End: Complemental strand, 22213026 - 22212982
Alignment:
Q  444 gatcaattgacaccaggtatcaacggattcattgacacctaatct 488  Q
    ||||| ||||| |||||| |||||||||||||||||||| |||||    
T  22213026 gatcagttgacgccaggtgtcaacggattcattgacaccaaatct 22212982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 499
Target Start/End: Original strand, 55976177 - 55976226
Alignment:
Q  450 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 499  Q
    |||||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  55976177 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcat 55976226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 444 - 499
Target Start/End: Complemental strand, 24551971 - 24551916
Alignment:
Q  444 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 499  Q
    |||| ||||||||||||| ||||||||||  |||||||| ||||||||||||||||    
T  24551971 gatccattgacaccaggtgtcaacggatttgttgacaccaaatcttaaacgttcat 24551916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 444 - 499
Target Start/End: Original strand, 55000692 - 55000747
Alignment:
Q  444 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 499  Q
    |||| ||||||||||| | ||||||||||| |||||||| ||||||||||||||||    
T  55000692 gatccattgacaccagatgtcaacggattcgttgacaccaaatcttaaacgttcat 55000747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 452 - 499
Target Start/End: Complemental strand, 55976995 - 55976948
Alignment:
Q  452 gacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 499  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  55976995 gacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcat 55976948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 498
Target Start/End: Complemental strand, 20774228 - 20774174
Alignment:
Q  444 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttca 498  Q
    |||| ||||||||||||| ||||||||||| |||||||| ||||| || ||||||    
T  20774228 gatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgttca 20774174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 487
Target Start/End: Complemental strand, 9365858 - 9365821
Alignment:
Q  450 ttgacaccaggtatcaacggattcattgacacctaatc 487  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  9365858 ttgacaccaggtgtcaacggattcattgacaccaaatc 9365821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 499
Target Start/End: Original strand, 19550297 - 19550346
Alignment:
Q  450 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 499  Q
    |||||||||||| ||||||||||| |||||||| ||| |||| |||||||    
T  19550297 ttgacaccaggtgtcaacggattcgttgacaccaaattttaagcgttcat 19550346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 496
Target Start/End: Complemental strand, 24158868 - 24158816
Alignment:
Q  444 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgtt 496  Q
    |||| ||||||||||||| ||||| ||||| |||||||| |||||||| ||||    
T  24158868 gatccattgacaccaggtgtcaacagattcgttgacaccaaatcttaaccgtt 24158816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 488
Target Start/End: Complemental strand, 30573757 - 30573713
Alignment:
Q  444 gatcaattgacaccaggtatcaacggattcattgacacctaatct 488  Q
    |||| ||||||||||||| ||||||||||| |||||||| |||||    
T  30573757 gatccattgacaccaggtgtcaacggattcgttgacaccaaatct 30573713  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 499
Target Start/End: Original strand, 17603179 - 17603228
Alignment:
Q  450 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 499  Q
    |||||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  17603179 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcat 17603228  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 451 - 499
Target Start/End: Complemental strand, 17604002 - 17603954
Alignment:
Q  451 tgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 499  Q
    ||||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  17604002 tgacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcat 17603954  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 450 - 499
Target Start/End: Complemental strand, 21727571 - 21727522
Alignment:
Q  450 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 499  Q
    |||||||||||| ||||||||||| |||||||| |||||||| |||||||    
T  21727571 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaagcgttcat 21727522  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 444 - 497
Target Start/End: Original strand, 46149634 - 46149687
Alignment:
Q  444 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttc 497  Q
    |||| ||||||||||||| |||| |||||| |||||||| ||||||||||||||    
T  46149634 gatccattgacaccaggtgtcaatggattcgttgacaccaaatcttaaacgttc 46149687  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 499
Target Start/End: Complemental strand, 11654077 - 11654022
Alignment:
Q  444 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 499  Q
    |||| ||||||||||| | ||||||||||| |||||||| ||||||||| ||||||    
T  11654077 gatccattgacaccagatctcaacggattcgttgacaccaaatcttaaatgttcat 11654022  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 319
Target Start/End: Complemental strand, 46786728 - 46786689
Alignment:
Q  280 aattgtaggttcgccttaggccaccaaaatctcataaacg 319  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  46786728 aattgtaggttcgccctaggccaccaaaatctcagaaacg 46786689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 496
Target Start/End: Original strand, 48648214 - 48648260
Alignment:
Q  450 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgtt 496  Q
    |||||||||||| ||||||||||| |||||||| |||||||| ||||    
T  48648214 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaaccgtt 48648260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 498
Target Start/End: Complemental strand, 265140 - 265092
Alignment:
Q  450 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttca 498  Q
    |||||||||||| ||||||||||| |||||||| ||||| || ||||||    
T  265140 ttgacaccaggtgtcaacggattcgttgacaccaaatctcaagcgttca 265092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 482
Target Start/End: Complemental strand, 40872850 - 40872818
Alignment:
Q  450 ttgacaccaggtatcaacggattcattgacacc 482  Q
    |||||||||||| ||||||||||||||||||||    
T  40872850 ttgacaccaggtgtcaacggattcattgacacc 40872818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 496
Target Start/End: Complemental strand, 48649221 - 48649169
Alignment:
Q  444 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgtt 496  Q
    |||| ||||||||||||| ||||| ||||| |||||||| |||||||| ||||    
T  48649221 gatccattgacaccaggtgtcaacagattcgttgacaccaaatcttaaccgtt 48649169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 496
Target Start/End: Complemental strand, 48765118 - 48765066
Alignment:
Q  444 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgtt 496  Q
    |||| ||||||||||||| |||| |||||| |||||||| |||||||| ||||    
T  48765118 gatccattgacaccaggtgtcaatggattcgttgacaccaaatcttaaccgtt 48765066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 482
Target Start/End: Complemental strand, 52282454 - 52282422
Alignment:
Q  450 ttgacaccaggtatcaacggattcattgacacc 482  Q
    |||||||||||| ||||||||||||||||||||    
T  52282454 ttgacaccaggtgtcaacggattcattgacacc 52282422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 444 - 499
Target Start/End: Original strand, 24991974 - 24992029
Alignment:
Q  444 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 499  Q
    |||| ||||||||||||| ||||||||||| |||||||| |||| |||||||||||    
T  24991974 gatccattgacaccaggtgtcaacggattcgttgacaccaaatcataaacgttcat 24992029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 499
Target Start/End: Complemental strand, 24992785 - 24992737
Alignment:
Q  451 tgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 499  Q
    ||||||||||| ||||||||||| |||||| | ||||||||||||||||    
T  24992785 tgacaccaggtgtcaacggattcgttgacatcaaatcttaaacgttcat 24992737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 488
Target Start/End: Original strand, 25468514 - 25468558
Alignment:
Q  444 gatcaattgacaccaggtatcaacggattcattgacacctaatct 488  Q
    |||| ||||||||||||| |||||||||||||||||||| |||||    
T  25468514 gatccattgacaccaggtgtcaacggattcattgacaccaaatct 25468558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 498
Target Start/End: Original strand, 30663368 - 30663416
Alignment:
Q  450 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttca 498  Q
    |||||||||||||||||||||||| |||||||| ||||| || ||||||    
T  30663368 ttgacaccaggtatcaacggattcgttgacaccaaatctcaaccgttca 30663416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 319
Target Start/End: Original strand, 34454164 - 34454203
Alignment:
Q  280 aattgtaggttcgccttaggccaccaaaatctcataaacg 319  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  34454164 aattgtaggttcgccctaggccaccaaaatctcagaaacg 34454203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 499
Target Start/End: Original strand, 47967866 - 47967921
Alignment:
Q  444 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 499  Q
    |||| ||||||||||||| ||||||||||| |||||||| |||||| | |||||||    
T  47967866 gatccattgacaccaggtgtcaacggattcgttgacaccaaatcttgagcgttcat 47967921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 496
Target Start/End: Complemental strand, 25469128 - 25469082
Alignment:
Q  450 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgtt 496  Q
    |||||||||||| ||||||||||| |||||||| |||||||| ||||    
T  25469128 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaaccgtt 25469082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 491
Target Start/End: Complemental strand, 28182114 - 28182073
Alignment:
Q  450 ttgacaccaggtatcaacggattcattgacacctaatcttaa 491  Q
    |||||||||||| ||||||||||| |||||||| ||||||||    
T  28182114 ttgacaccaggtgtcaacggattctttgacaccaaatcttaa 28182073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 482
Target Start/End: Original strand, 45818031 - 45818063
Alignment:
Q  450 ttgacaccaggtatcaacggattcattgacacc 482  Q
    |||||||||||| ||||||||||||||||||||    
T  45818031 ttgacaccaggtgtcaacggattcattgacacc 45818063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 450 - 499
Target Start/End: Complemental strand, 32414565 - 32414516
Alignment:
Q  450 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 499  Q
    |||||||||||| ||||||||||| |||||||| |||||||| |||||||    
T  32414565 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaagcgttcat 32414516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 443 - 499
Target Start/End: Original strand, 28929849 - 28929905
Alignment:
Q  443 agatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 499  Q
    ||||| ||||||||||| | ||||||||||| |||||||| |||||||||| |||||    
T  28929849 agatccattgacaccagatgtcaacggattcgttgacaccaaatcttaaactttcat 28929905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 496
Target Start/End: Original strand, 38628261 - 38628307
Alignment:
Q  450 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgtt 496  Q
    |||||||||||||||||||||||| |||||||  |||||||| ||||    
T  38628261 ttgacaccaggtatcaacggattcgttgacacaaaatcttaaccgtt 38628307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 496
Target Start/End: Original strand, 31641516 - 31641568
Alignment:
Q  444 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgtt 496  Q
    |||| ||||||||||||| |||| |||||| |||||||| |||||||| ||||    
T  31641516 gatccattgacaccaggtgtcaatggattcgttgacaccaaatcttaaccgtt 31641568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2007 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold2007
Description:

Target: scaffold2007; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 498
Target Start/End: Original strand, 755 - 809
Alignment:
Q  444 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttca 498  Q
    |||| ||||||||||||| ||||||||||| |||||||| ||||| || ||||||    
T  755 gatccattgacaccaggtttcaacggattcgttgacaccaaatctcaagcgttca 809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 498
Target Start/End: Original strand, 8488473 - 8488527
Alignment:
Q  444 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttca 498  Q
    |||| ||||||||||||| ||||||||||| |||||||| ||||| || ||||||    
T  8488473 gatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgttca 8488527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 490
Target Start/End: Complemental strand, 19311868 - 19311828
Alignment:
Q  450 ttgacaccaggtatcaacggattcattgacacctaatctta 490  Q
    |||||||||||| ||||||||||| |||||||| |||||||    
T  19311868 ttgacaccaggtgtcaacggattcgttgacaccaaatctta 19311828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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