View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16275_low_22 (Length: 253)
Name: NF16275_low_22
Description: NF16275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16275_low_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 6712636 - 6712863
Alignment:
| Q |
17 |
ataaaaagggtatgttctaatcaataacatcaagctcatggggtattcagattctcatccaactacttttttcttcgaatgatatccctttaaaaaatac |
116 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6712636 |
ataaaaagggtatgttcaaatcaataacatcaagctcatggggtattcagattctcatccaactacttttttcttcgaatgatatccctttaaaaaatac |
6712735 |
T |
|
| Q |
117 |
ttgaccgatattcaattcaataacagtttcattagcattatccaagtcattaaaaaaccaatttcactacgtacattccacaaaaatgtcttttgatgct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6712736 |
ttgaccgatattcaattcaataacagtttcattagcattatccaagtcattaaaaaaccaatttcactacgtacattccacaaaaatgtcttttgatgct |
6712835 |
T |
|
| Q |
217 |
aataatattcaacaactacacgaataat |
244 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
6712836 |
aataatattcaacaactacacgaataat |
6712863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University