View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16275_low_23 (Length: 252)
Name: NF16275_low_23
Description: NF16275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16275_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 17870287 - 17870054
Alignment:
| Q |
1 |
tagctagagctatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtgcactggataataattcagagaaggtagtgcaagatgcattgaa |
100 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
17870287 |
tagctagagccatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtgcacttgataataattcagaaaaggtagtgcaagatgcattgaa |
17870188 |
T |
|
| Q |
101 |
taaggtaatgattggaaggactagtgtggttgtagcacataggttgagtaccatacacaattgtgatgttattgctgttttagaaaaagggaaaatggtt |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17870187 |
taaggtaatggttggaaggactagtgtggttgtagcacataggttgagtaccatacacaattgtgatgttattgctgttttagaaaaagggaaaatggtt |
17870088 |
T |
|
| Q |
201 |
gaaattggaactcacaaagcattattggataaag |
234 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
17870087 |
gaaattggaactcacaaagcattattggataaag |
17870054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 2451170 - 2451350
Alignment:
| Q |
1 |
tagctagagctatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtgcactggataataattcagagaaggtagtgcaagatgcattgaa |
100 |
Q |
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|
||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||| |||| | | ||||||||| ||||||||||||| || | |
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| T |
2451170 |
tagctagagctatattgaagaatccaaaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaagttagtgcaagatgctttaga |
2451269 |
T |
|
| Q |
101 |
taaggtaatgattggaaggactagtgtggttgtagcacataggttgagtaccatacacaattgtgatgttattgctgtttt |
181 |
Q |
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| ||| ||||||||||| || ||||||||||| || |||||||||||||| ||||| ||||||||| | |||| |||||| |
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| T |
2451270 |
aagggttatgattggaagaacaagtgtggttgtggctcataggttgagtactatacaaaattgtgatatgattgttgtttt |
2451350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 2672251 - 2672068
Alignment:
| Q |
1 |
tagctagagctatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtgcactggataataattcagagaaggtagtgcaagatgcattgaa |
100 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||| | |||||||||||||||||||| |||| | | || ||||| |||| |||||||| || | |
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| T |
2672251 |
tagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatctgagaaattagtccaagatgctttaga |
2672152 |
T |
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| Q |
101 |
taaggtaatgattggaaggactagtgtggttgtagcacataggttgagtaccatacacaattgtgatgttattgctgttttaga |
184 |
Q |
| |
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| ||| ||| |||||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||| | |||||||||||||| |
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| T |
2672151 |
aagggttatggttggaaggacaagtgtggttgtagcacataggttgagtactatacaaaattgcgatttgattgctgttttaga |
2672068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 2440448 - 2440628
Alignment:
| Q |
1 |
tagctagagctatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtgcactggataataattcagagaaggtagtgcaagatgcattgaa |
100 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||| | |||||||||||||||||||| |||| | | |||||||| |||| |||||||| || | |
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| T |
2440448 |
tagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtccaagatgctttaga |
2440547 |
T |
|
| Q |
101 |
taaggtaatgattggaaggactagtgtggttgtagcacataggttgagtaccatacacaattgtgatgttattgctgtttt |
181 |
Q |
| |
|
||||| ||| |||||||||| || |||||||||||||||||||||||||| || || || |||||| | ||||||||||| |
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| T |
2440548 |
aaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactattcaaaactgtgatttgattgctgtttt |
2440628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 2568876 - 2568696
Alignment:
| Q |
1 |
tagctagagctatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtgcactggataataattcagagaaggtagtgcaagatgcattgaa |
100 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||| | |||||||||||||||||||| |||| | | || ||||| |||| |||||||| || | |
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| T |
2568876 |
tagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatctgagaaattagtccaagatgctttaga |
2568777 |
T |
|
| Q |
101 |
taaggtaatgattggaaggactagtgtggttgtagcacataggttgagtaccatacacaattgtgatgttattgctgtttt |
181 |
Q |
| |
|
| ||| ||| |||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||| | ||||||||||| |
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| T |
2568776 |
aagggttatggttggaaggacaagtgtggttgtggcacataggttgagtactatacaaaattgtgatttgattgctgtttt |
2568696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 2592394 - 2592574
Alignment:
| Q |
1 |
tagctagagctatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtgcactggataataattcagagaaggtagtgcaagatgcattgaa |
100 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||| | |||||||||||||||||||| |||| | | |||||||| |||| |||||||| || | |
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|
| T |
2592394 |
tagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtccaagatgctttaga |
2592493 |
T |
|
| Q |
101 |
taaggtaatgattggaaggactagtgtggttgtagcacataggttgagtaccatacacaattgtgatgttattgctgtttt |
181 |
Q |
| |
|
||||| ||| |||||||||| || |||||||||||||||||||||||||| || || || |||||| | ||||||||||| |
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| T |
2592494 |
aaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactatccaaaactgtgatttgattgctgtttt |
2592574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 2641091 - 2640911
Alignment:
| Q |
1 |
tagctagagctatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtgcactggataataattcagagaaggtagtgcaagatgcattgaa |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||| | |||||||||||||||||||| |||| | | |||||||| ||||||||||||| || | |
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|
| T |
2641091 |
tagctagagctatattgaagaatccaaaggtgttacttttggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtgcaagatgctttaga |
2640992 |
T |
|
| Q |
101 |
taaggtaatgattggaaggactagtgtggttgtagcacataggttgagtaccatacacaattgtgatgttattgctgtttt |
181 |
Q |
| |
|
| || ||| |||||||||| ||||| ||||| ||||||||||||||||| ||||| ||||||||| | ||||||||||| |
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|
| T |
2640991 |
aagagttatggttggaaggacaagtgtagttgtcgcacataggttgagtactatacaaaattgtgatttgattgctgtttt |
2640911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 2596435 - 2596258
Alignment:
| Q |
1 |
tagctagagctatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtgcactggataataattcagagaaggtagtgcaagatgcattgaa |
100 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||| | |||||||||||||||||||| |||| | | |||||||| |||| |||||| | || | |
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|
| T |
2596435 |
tagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtccaagatactttaga |
2596336 |
T |
|
| Q |
101 |
taaggtaatgattggaaggactagtgtggttgtagcacataggttgagtaccatacacaattgtgatgttattgctgt |
178 |
Q |
| |
|
| ||| ||| |||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||| | |||||||| |
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|
| T |
2596335 |
aagggttatggttggaaggacaagtgtggttgtggcacataggttgagtactatacaaaattgtgatttgattgctgt |
2596258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 2623938 - 2624118
Alignment:
| Q |
1 |
tagctagagctatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtgcactggataataattcagagaaggtagtgcaagatgcattgaa |
100 |
Q |
| |
|
||||||||||||| || ||||||||| | ||||||||| | |||||||||||||||||||| |||| | | || ||||| |||| ||||| | || | |
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|
| T |
2623938 |
tagctagagctatattaaagaatccagatgtgttgcttttggatgaagcaacaagtgcacttgatagtcaatctgagaaattagtccaagacactttaga |
2624037 |
T |
|
| Q |
101 |
taaggtaatgattggaaggactagtgtggttgtagcacataggttgagtaccatacacaattgtgatgttattgctgtttt |
181 |
Q |
| |
|
||||| ||| |||||||||| || |||||||||||||||||||||||||| || || || |||||| | ||||||||||| |
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|
| T |
2624038 |
aaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactatccaaaactgtgatttgattgctgtttt |
2624118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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