View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16275_low_24 (Length: 249)
Name: NF16275_low_24
Description: NF16275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16275_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 20415821 - 20415693
Alignment:
| Q |
1 |
caagtcaccgaaaggcaaaaacaacggacattaccagctcgttaagatgcattttctttccatactta--actggtatcttgacttgggtga-aacacag |
97 |
Q |
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||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||| | || | | |
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| T |
20415821 |
caagtcaccgaaaggcaaacacaacggacattaccagctcattaagatgcattttctttccatactcagaactggtatcttgacttggggggcaagaaac |
20415722 |
T |
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| Q |
98 |
catgtaacataaaattactcaaatctgat |
126 |
Q |
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|||||||||| |||||||||||||||||| |
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| T |
20415721 |
catgtaacatcaaattactcaaatctgat |
20415693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 20458531 - 20458477
Alignment:
| Q |
1 |
caagtcaccgaaaggcaaaaacaacggacattaccagctcgttaagatgcatttt |
55 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20458531 |
caagacaccgaaaggcaaaaacaacagacattaccagctcgttaagatgcatttt |
20458477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 20415573 - 20415529
Alignment:
| Q |
189 |
tttatgatagtaaaaaaggtacagttaaaacacgtagttaacttt |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20415573 |
tttatgatagtaaaaaaggtacagttaaaacacgtagttaacttt |
20415529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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