View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16275_low_3 (Length: 497)
Name: NF16275_low_3
Description: NF16275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16275_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 174 - 489
Target Start/End: Complemental strand, 45593250 - 45592935
Alignment:
| Q |
174 |
caaatatatatcactatgcacacagaataaattaacataaactaaaaagacaccaaatcacacatgaagaaaacacatagtaataataacacatcatatt |
273 |
Q |
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| T |
45593250 |
caaatatacatcactatgcacacagaataaattaacataaactaaaaagacaccaaatcacacatgaagaaaacacatagtaataataacacatcatatt |
45593151 |
T |
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| Q |
274 |
ttgttgaccacaagcttgaacattgtagcattagaaaagaccaaagagtttctttggagctgttccagttgccctgtattttgcagctatctcctctgct |
373 |
Q |
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| T |
45593150 |
ttgttgaccacaagcttgaacattgtagcattagaaaagaccaaagagtttctttggagctgttccagttgccctgtattttgcagctatctcctctgct |
45593051 |
T |
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| Q |
374 |
ttgagtaaatcttcacctttctttgcctcaatcatagccttcttttcttcagctgccttgtgaagtgctgctattttgtttttcaatttctctgcatatt |
473 |
Q |
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| T |
45593050 |
ttgagtaaatcttcacctttctttgcctcaatcatagccttcttttcttcagctgccttgtgaagtgctgctattttgtttttcaatttctctgcatatt |
45592951 |
T |
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| Q |
474 |
ctccctttttcttctc |
489 |
Q |
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| T |
45592950 |
ctccctttttcttctc |
45592935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 14 - 177
Target Start/End: Complemental strand, 45593436 - 45593272
Alignment:
| Q |
14 |
aattataatgtcccaggtttcatgatgatctgtgttttgttattcacagtgttttcattggtgtatctttcttcgccaacatctaagaatgagtgaatta |
113 |
Q |
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| T |
45593436 |
aattataatgtcccaggtttcatgatgatctgtgttttgttattca--gtgttttcattggtgtatctttctttgccaacatctaagaatgagtgaatta |
45593339 |
T |
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| Q |
114 |
gt-ggtctaatacaaggactttatattgcacaaattgagtgagagttaaa--gtttttattcccaaa |
177 |
Q |
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| T |
45593338 |
gtgggtctaatacaaggactttatattgcacaaattgaatgagagttaaattgtttttattcccaaa |
45593272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 378
Target Start/End: Original strand, 11750196 - 11750260
Alignment:
| Q |
314 |
ccaaagagtttctttggagctgttccagttgccctgtattttgcagctatctcctctgctttgag |
378 |
Q |
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| T |
11750196 |
ccaaggagtttctttggaacagttcctgttgcattgtgttttgcagctatttcctctgccttgag |
11750260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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