View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16275_low_31 (Length: 236)
Name: NF16275_low_31
Description: NF16275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16275_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3016000 - 3016220
Alignment:
| Q |
1 |
tatgttataagcactaagttgtttatccaaaaagagcataaagctaacaacatcaaatatcaattttaagcgtgcattcatgcaaagtgatgtcattgga |
100 |
Q |
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| T |
3016000 |
tatgttataagcactaagttatttatccaaaaagagcataaagctaacaacatcaaatatcaactttgagggtgcattcatgcaaaggcatctcattgga |
3016099 |
T |
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| Q |
101 |
gtatgatatgccaggctcacctcaaaaggagcaaaatcaacttcctcgttcaggttgaagactgaatttacagtccataatctcaacaaaggctgaaaag |
200 |
Q |
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| T |
3016100 |
gtatgatatgccagactcacctcaaaaggagcaaaatcagcttcctcgttcaggttgaagactgaatttacagtccataatctcaacaaaggctgaaaag |
3016199 |
T |
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| Q |
201 |
cacaataactagccaacattg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
3016200 |
cacaataactagccaacattg |
3016220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 3044435 - 3044638
Alignment:
| Q |
17 |
agttgtttatccaaaaagagcataaagctaacaacatcaaatatcaattttaagcgtgcattcatgcaaagtgatgtcattggagtatgatatgccaggc |
116 |
Q |
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||||||||||||||| | || || | |||||||| ||||||||||| ||| || |||||||||||||||||||| ||||||||||||| | || || | |
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| T |
3044435 |
agttgtttatccaaacatggcctacacctaacaacgtcaaatatcaactttgagtgtgcattcatgcaaagtgatctcattggagtatggt-tgacaaac |
3044533 |
T |
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| Q |
117 |
tcacctcaaaaggagcaaaatcaacttcctcgttcaggttgaagactgaatttacagtccataatctcaacaaaggctgaaaagcacaataactagccaa |
216 |
Q |
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|||||||||||||||||||| || ||||| |||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3044534 |
tcacctcaaaaggagcaaaaacagtctcctcattcaggttgaaggctgaatttccagtccacaatctcaacaaaggctgaaaagcacaataactagccaa |
3044633 |
T |
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| Q |
217 |
cattg |
221 |
Q |
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||||| |
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| T |
3044634 |
cattg |
3044638 |
T |
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