View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16275_low_5 (Length: 448)
Name: NF16275_low_5
Description: NF16275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16275_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 218 - 432
Target Start/End: Complemental strand, 1316434 - 1316220
Alignment:
| Q |
218 |
ttaggctctggacaatatgtttatgtaaaattacatagcttgttcgattttaatgtcaactcaaatacattaattgcttcaatagtccttttgaactcgt |
317 |
Q |
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| T |
1316434 |
ttaggctctggacaatatgtttatgtaaaattgcatagcttgttcgattttaatgtcaactcaaatacattaattgcttcaatagtccttttgaactcgt |
1316335 |
T |
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| Q |
318 |
tcattactttttcgacctcttcaagaacacgtttcaggatacctacctgaatctaaagaaatacaacaagaattaattttaataagtaaaagcatgtgac |
417 |
Q |
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| T |
1316334 |
tcattactttttcgacctcttcaagaacacgtttcaggatacctacctgaatctaaagaaatacaacaagaattaattttaataagtaaaagcatgtgac |
1316235 |
T |
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| Q |
418 |
agagtaaattggtac |
432 |
Q |
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| T |
1316234 |
agagtaaattggtac |
1316220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 72 - 221
Target Start/End: Complemental strand, 1316623 - 1316474
Alignment:
| Q |
72 |
ctggattaggatttggcatataccatggaggcattcccgtgaccttgagtttatgaaaataggcttccaaatataacaactaggagtgatagagtgcccg |
171 |
Q |
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| T |
1316623 |
ctggattaggatttggcatataccatggaggcattcccgtgaccttgagtttatgaaaataggcttccaaatataacaactaggagtgatagagtgcctg |
1316524 |
T |
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| Q |
172 |
ggaggcagggagataatgctggaaaaactagttatcttggttaaatttag |
221 |
Q |
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| T |
1316523 |
ggaggcagggagataatgctggaaaaactagttatcttggttaaatttag |
1316474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 73 - 203
Target Start/End: Complemental strand, 43486753 - 43486621
Alignment:
| Q |
73 |
tggattaggatttggcatataccatggaggcattcccgtgaccttgagtttatgaaaataggcttccaaatataacaactaggagtgatagagt--gccc |
170 |
Q |
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| T |
43486753 |
tggattaggatttggcatataccatgaaggcattcccgtgaccttgagtttatgaaaataggcttccaaatataacaactaggagtgatagagtgggacc |
43486654 |
T |
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| Q |
171 |
gggaggcagggagataatgctggaaaaactagt |
203 |
Q |
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| T |
43486653 |
aggaggcagggagataatgctggaaaaactagt |
43486621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 308 - 419
Target Start/End: Complemental strand, 43483871 - 43483760
Alignment:
| Q |
308 |
ttgaactcgttcattactttttcgacctcttcaagaacacgtttcaggatacctacctgaatctaaagaaatacaacaagaattaattttaataagtaaa |
407 |
Q |
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| T |
43483871 |
ttgaactcattcattactttttcgacctcttcaagaacacgtttcaggatacctacctgaatctaaagaaatacaacaagaattaattttaataagtaaa |
43483772 |
T |
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| Q |
408 |
agcatgtgacag |
419 |
Q |
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| T |
43483771 |
agcatgtgacag |
43483760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 218 - 304
Target Start/End: Complemental strand, 43486549 - 43486463
Alignment:
| Q |
218 |
ttaggctctggacaatatgtttatgtaaaattacatagcttgttcgattttaatgtcaactcaaatacattaattgcttcaatagtc |
304 |
Q |
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|||||||||||||||||||||||||||||||| || | ||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43486549 |
ttaggctctggacaatatgtttatgtaaaattgcaatgtttgtttgattttaatgtcaagtcaaatacattaattgcttcaatagtc |
43486463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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