View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16275_low_6 (Length: 409)
Name: NF16275_low_6
Description: NF16275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16275_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 20 - 398
Target Start/End: Original strand, 46738536 - 46738903
Alignment:
| Q |
20 |
atcggcatgacaaagttgctctggtgatagtagttcaaatgttgaaagattttgggtgaagtgaatgtctaactgagcaaattgtcttctgaagtatgtt |
119 |
Q |
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| T |
46738536 |
atcggcatgacaaagttgctccggtgatagtagttcaaatgttgaaagattttgggtgaagtgaatgtctaactgagcaaattgtcttctgaagtatgtt |
46738635 |
T |
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| Q |
120 |
gtatattgataattcaacccttgaatttggaaagaacaactacatgagaagataatggtctgtatgtataatctggctagcatgccaatggtttcatttt |
219 |
Q |
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| T |
46738636 |
gtatattgataattcaacccttgaatttggaaagaacaactacatgagaagataatggtctgtatgtataatctggctagc-----------ttcatttt |
46738724 |
T |
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| Q |
220 |
tcggtggattgtttaaagacttatcgtagaattaattacacaaatgcttgggaaacaagttttagcagaaaatcccttaaaaagaaagttttagtagaaa |
319 |
Q |
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| T |
46738725 |
tcggtggattgtttaaagacttatcgtagaattaattacacaaatgcttgggaaacaagttttagtagaaaatcccttaaaaagaaagttttagtagaaa |
46738824 |
T |
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| Q |
320 |
aattaatctgtatctgattattaagtgcaaatggtgtctgttttggtaaatccatatacctcctctttttcattttcat |
398 |
Q |
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|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
46738825 |
aattaatctgaatctgattattaagtgcaaatgatgtctgttttggtaaatccatatacctcatctttttcatcttcat |
46738903 |
T |
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