View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16275_low_7 (Length: 406)
Name: NF16275_low_7
Description: NF16275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16275_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 19 - 397
Target Start/End: Complemental strand, 42447269 - 42446891
Alignment:
| Q |
19 |
aagttacactagtgtttcggtatttgttgaagttctaagatatggaaatgacacgttctttgagtaaattctgattctgttccccgattcacatgctctt |
118 |
Q |
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| T |
42447269 |
aagttacactagtgtttcggtatttgttgaagttctaagatatggaaatgacatgttctttgagtaaattctgattctgttccccgattcacatgctctt |
42447170 |
T |
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| Q |
119 |
ctacttctagtgttggtgtactctaatcagtatctttacattttgctaaatctttattaacgaagatattgtaaattaaacttcagtgtttaaactttaa |
218 |
Q |
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| T |
42447169 |
ctacttctagtgttggtgtactctaatcattatctttacattttgctaaatctttattaacgaagatattgtaaattaaacttcagtgtttaaactttaa |
42447070 |
T |
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| Q |
219 |
acatctttaaaattgatggtctaacaaatatattaaacagtcttgtatattgggctatctggaaagttgctgataatgatagagaccaaagtatcttgta |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42447069 |
acatctttaaaattgatggtctaacaaatatattaaacagtcttgtatattgggctatctggaaagttgctgataatgatagataccaaagtatcttgta |
42446970 |
T |
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| Q |
319 |
tctatccatgcatatttctggcgaggcataattatcatgagcattttaatcccaatgtaatttgtttttggagaattat |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42446969 |
tctatccatgcatatttctggcgaggcataattatcatgagcattttaatcccaatgtaatttgtttttggagaattat |
42446891 |
T |
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