View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16276_high_10 (Length: 325)
Name: NF16276_high_10
Description: NF16276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16276_high_10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 325
Target Start/End: Original strand, 45671518 - 45671834
Alignment:
| Q |
13 |
aatatgcaagcttacaaagaaggtaaattgacatgctatattttctttaatttttatggctaaaaaatctgcatttgaccacatgttacacatttgtaag |
112 |
Q |
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| T |
45671518 |
aatatgcaagcttacaaagaaggtaaattgacatgctatattttctttaatttttatggctaaaaaatctgcatttgaccacatgttacacatttgtaag |
45671617 |
T |
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| Q |
113 |
ctcgtggacaatgcagtgtctggcacataaatgagcaaccagaacatatttgagttaatcaattggctg----aagttagtatttcttaccctttgaacg |
208 |
Q |
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| T |
45671618 |
ctcgtggacaatgcagtgtctggcacataaatgagcaaccagaacagatttgagttaatcaattggctgaaacaagttagtatttcttacccgttgaacg |
45671717 |
T |
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| Q |
209 |
agtcgcagggcagcaaaccataaacctaaaaaagcattgtgccatgcagtagcattgactgcctgtaaagccttgaccaagtcagtaagaagttcaacag |
308 |
Q |
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| T |
45671718 |
agccgcagggcagcaaaccataaacctaaaaaagcattgtgccatgcagtagcattgactgcctgtaaagccttgaccaagtcagtaagaagttcaacag |
45671817 |
T |
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| Q |
309 |
cactggcagccatgaca |
325 |
Q |
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| T |
45671818 |
cactggcagccatgaca |
45671834 |
T |
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