View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16276_high_1_N (Length: 395)
Name: NF16276_high_1_N
Description: NF16276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16276_high_1_N |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 394
Target Start/End: Original strand, 44851472 - 44851837
Alignment:
| Q |
19 |
ggacatcatcatagaccaagaagatcctttcaaactaaatatagaaaaaagccatattgacaaaatagatcttctcttagaggaagagccactctgctat |
118 |
Q |
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| T |
44851472 |
ggacatcattatagaccaagaagatcctttcaaactaaatatagaaaaaagccatattgacaaaatagatcttctcttagaggaagagccactctgctat |
44851571 |
T |
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| Q |
119 |
gcaccgttaaagaatatgtcagcatctaaatcggaagaatttgattttttcgatgagcttgaggagttacctatgtcttcatctattttacactttacga |
218 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44851572 |
gcacagttaaagaatatgtcagcatctaaatcagaagaatttgattttttcgatgagcttgaggagttacctatgtcttcatctattttacactttacga |
44851671 |
T |
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| Q |
219 |
ggagcattttttctgatgaaaggattcctgttgccccttcttgattgattcaagtgnnnnnnnnnnatgtgtctgttgtctagaagaatgtaacaaaatg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44851672 |
ggagcattttttctgatgaaaggattcctgttgccccttcttgattgatt----------ttttttatgtgtctgttgtctagaagaatgtaacaaaatg |
44851761 |
T |
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| Q |
319 |
tattgttcatatatcgcatgctacaaacatcccacatatcaatttcaggtagtttttaaatttggcatctttctat |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44851762 |
tattgttcatatatcgcatgctacaaacatcccacatatcaatttcaggtagtttttaaatttggcatctttctat |
44851837 |
T |
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