View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16276_high_3 (Length: 349)
Name: NF16276_high_3
Description: NF16276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16276_high_3 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0097 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 7 - 349
Target Start/End: Original strand, 10036378 - 10036720
Alignment:
| Q |
7 |
tcgaagaatatgaggataacaaaattatcatctgcaacaggttaaacaattatagttgatctttaccctttagttgtagaattattttggacgattcaca |
106 |
Q |
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| T |
10036378 |
tcgaagactatgaggataacaaaattatcatctgcaacaggttaaacaattatagttgatctttaccctttagttgtagaattattttggacgattcaca |
10036477 |
T |
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| Q |
107 |
ttttgtttcaaatttactaggcgttaaatttactaggttttctggtttattatgcagatgccaaatagcagtccaccaggaatgctatggtgcaaagcat |
206 |
Q |
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| T |
10036478 |
ttttgtttcaaattgactaggcgttaaatttactaggttttctggtttattatgcagatgccaaatagcagtccaccaggaatgctatggtgcaaagcat |
10036577 |
T |
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| Q |
207 |
gtccaggattttacttcttgggtatgcagagtatgcgaaacccctgatgttgaaagagagtgctgcctttgtccggtaaaaggtaggtcaatctagtatt |
306 |
Q |
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| T |
10036578 |
gtccaggattttacttcttgggtatgcagagtatgcgaaacccctgatgttgaaagagagtgctgcctttgtccagtaaaaggtaggtcaatctagtatt |
10036677 |
T |
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| Q |
307 |
ttgggccagtttgaactctttttgttcttcctgatcatttatg |
349 |
Q |
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| T |
10036678 |
ttgggccagtttgaactctttttgttcttcctgatcatttatg |
10036720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 152 - 288
Target Start/End: Original strand, 10128 - 10264
Alignment:
| Q |
152 |
tttattatgcagatgccaaatagcagtccaccaggaatgctatggtgcaaagcatgtccaggattttacttcttgggtatgcagagtatgcgaaacccct |
251 |
Q |
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| T |
10128 |
tttattatgcagtagtcaaatattagtccaccaagaatgctatggtgcagagcatgttcaggattttacttattgggtttctagagtatgcgaaactcct |
10227 |
T |
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| Q |
252 |
gatgttgaaagagagtgctgcctttgtccggtaaaag |
288 |
Q |
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| T |
10228 |
gatgttgaaagagagtgttgcctttgtccagtaaaag |
10264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 143 - 304
Target Start/End: Original strand, 1137 - 1297
Alignment:
| Q |
143 |
gttttctggtttattatgcagatgccaaatagcagtccaccaggaatgctatggtgcaaagcatgtccaggattttacttcttgggtatgcagagtatgc |
242 |
Q |
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||||||| ||||||||||||| | |||||| ||||| ||| ||||||||||||||| ||||||| || ||||||||||||||| | | ||||||||| |
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| T |
1137 |
gttttcttgtttattatgcagtagtcaaatattagtccgccaagaatgctatggtgcagagcatgttcatgattttacttcttggat-tctagagtatgc |
1235 |
T |
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| Q |
243 |
gaaacccctgatgttgaaagagagtgctgcctttgtccggtaaaaggtaggtcaatctagta |
304 |
Q |
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| T |
1236 |
gaaactcctgatgttgaaagagagtgttgcctttgtacagtaaaaggcacgtcaatccagta |
1297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 152 - 335
Target Start/End: Complemental strand, 1506 - 1324
Alignment:
| Q |
152 |
tttattatgcagatgccaaatagcagtccaccaggaatgctatggtgcaaagcatgtccaggattttacttcttgggtatgcagagtatgcgaaacccct |
251 |
Q |
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||||||||||| ||| |||||| || |||| || ||||||||||||||||| |||| || |||||||||||||| || | ||||||| |||||| || |
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| T |
1506 |
tttattatgcatatgtcaaataacaatccatcaagaatgctatggtgcaaaatatgttcaagattttacttcttgagtttttagagtattcgaaacttct |
1407 |
T |
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| Q |
252 |
gatgttgaaagagagtgctgcctttgtccggtaaaaggtaggtcaatctagtattttgggccagtttgaactctttttgttctt |
335 |
Q |
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| T |
1406 |
aatgttgaaagagattgtttcctttgtccagtaaaaagaacgtaaatctagtattttggg-cagtctcatctctttttgttctt |
1324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 10461 - 10391
Alignment:
| Q |
152 |
tttattatgcagatgccaaatagcagtccaccaggaatgctatggtgcaaagcatgtccaggattttactt |
222 |
Q |
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||||||||||| ||| |||||| || ||||||| |||| |||||||||||||||||| || |||||||||| |
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| T |
10461 |
tttattatgcatatgtcaaataacaatccaccaagaatactatggtgcaaagcatgttcaagattttactt |
10391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 10560 - 10509
Alignment:
| Q |
67 |
ctttaccctttagttgtagaattattttggacgattcacattttgtttcaaa |
118 |
Q |
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| T |
10560 |
ctttaccctttagttgtagaattacttttaactatttacattttgtttcaaa |
10509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 152 - 288
Target Start/End: Original strand, 20706054 - 20706190
Alignment:
| Q |
152 |
tttattatgcagatgccaaatagcagtccaccaggaatgctatggtgcaaagcatgtccaggattttacttcttgggtatgcagagtatgcgaaacccct |
251 |
Q |
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|||||||||||| | |||||| ||||||||| ||||||||||||||| ||||||| ||||||||||||| |||||| | |||||||||||||| ||| |
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| T |
20706054 |
tttattatgcagtagtcaaatattagtccaccaagaatgctatggtgcagagcatgttcaggattttacttattgggtttctagagtatgcgaaactcct |
20706153 |
T |
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| Q |
252 |
gatgttgaaagagagtgctgcctttgtccggtaaaag |
288 |
Q |
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| T |
20706154 |
gatgttgaaagagagtgttgcctttgtccagtaaaag |
20706190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 143 - 265
Target Start/End: Complemental strand, 42559409 - 42559287
Alignment:
| Q |
143 |
gttttctggtttattatgcagatgccaaatagcagtccaccaggaatgctatggtgcaaagcatgtccaggattttacttcttgggtatgcagagtatgc |
242 |
Q |
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| T |
42559409 |
gttttcttgtttattatgcactagtcaaatagcagtccaccaagaatgctatggtgcaaagcatgttcaggattttacttcttaggtttgtagagcattt |
42559310 |
T |
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| Q |
243 |
gaaacccctgatgttgaaagaga |
265 |
Q |
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||||| ||||||||||||||||| |
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| T |
42559309 |
gaaactcctgatgttgaaagaga |
42559287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 143 - 263
Target Start/End: Original strand, 20856954 - 20857074
Alignment:
| Q |
143 |
gttttctggtttattatgcagatgccaaatagcagtccaccaggaatgctatggtgcaaagcatgtccaggattttacttcttgggtatgcagagtatgc |
242 |
Q |
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||||||| ||||||||||||| | |||||| ||||||||| ||||||||||||||| ||||||| | |||||||||||||||||| | ||||||||| |
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| T |
20856954 |
gttttcttgtttattatgcagtagtcaaatattagtccaccaagaatgctatggtgcagagcatgttctggattttacttcttgggtttctagagtatgc |
20857053 |
T |
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| Q |
243 |
gaaacccctgatgttgaaaga |
263 |
Q |
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||||| | | ||||||||||| |
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| T |
20857054 |
gaaactcttaatgttgaaaga |
20857074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 143 - 335
Target Start/End: Complemental strand, 20857292 - 20857107
Alignment:
| Q |
143 |
gttttctggtttattatgcagatgccaaatagcagtccaccaggaatgctatggtgcaaagcatgtccaggattttacttcttgggtatgcagagtatgc |
242 |
Q |
| |
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||||||| ||||||||||| ||| |||||| || ||||||| ||||| |||||||||||||||| || |||||||||||||| || | ||||||| | |
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| T |
20857292 |
gttttcttatttattatgcatatgtcaaataacaatccaccaagaatgttatggtgcaaagcatggtcaagattttacttcttgagtttttagagtattc |
20857193 |
T |
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| Q |
243 |
gaaacccctgatgttgaaagagagtgctgcctttgtccggtaaaaggtaggtcaatctagtattttgggccagtttgaactctttttgttctt |
335 |
Q |
| |
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||| || ||||||||||||| || |||||| |||||| | | || |||||||||||||||| |||| | | |||||||||||||| |
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| T |
20857192 |
caaatttctaatgttgaaagagattg------ttgtccagtaaaaagaacgtaaatctagtattttggg-cagtctcatctctttttgttctt |
20857107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 20706387 - 20706317
Alignment:
| Q |
152 |
tttattatgcagatgccaaatagcagtccaccaggaatgctatggtgcaaagcatgtccaggattttactt |
222 |
Q |
| |
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||||||||||| ||| |||||| || ||||||| |||| |||||||||||||||||| || |||||||||| |
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| T |
20706387 |
tttattatgcatatgtcaaataacaatccaccaagaatactatggtgcaaagcatgttcaagattttactt |
20706317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 20706486 - 20706435
Alignment:
| Q |
67 |
ctttaccctttagttgtagaattattttggacgattcacattttgtttcaaa |
118 |
Q |
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|||||||||||||||||||||||| ||| || ||| ||||||||||||||| |
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| T |
20706486 |
ctttaccctttagttgtagaattacttttaactatttacattttgtttcaaa |
20706435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 159 - 289
Target Start/End: Complemental strand, 48484049 - 48483919
Alignment:
| Q |
159 |
tgcagatgccaaatagcagtccaccaggaatgctatggtgcaaagcatgtccaggattttacttcttgggtatgcagagtatgcgaaacccctgatgttg |
258 |
Q |
| |
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|||||||||||| | || || ||||| || ||||||||||||||| |||| || ||||||||||| ||||| || ||||| || ||||| || ||||||| |
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| T |
48484049 |
tgcagatgccaagttgctgttcaccaagagtgctatggtgcaaagaatgttcaagattttacttcctgggtttgtagagtgtgtgaaactccagatgttg |
48483950 |
T |
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| Q |
259 |
aaagagagtgctgcctttgtccggtaaaagg |
289 |
Q |
| |
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|||||||||||||||| ||||| |||||||| |
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| T |
48483949 |
aaagagagtgctgcctctgtccagtaaaagg |
48483919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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