View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16276_high_6 (Length: 343)
Name: NF16276_high_6
Description: NF16276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16276_high_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 13 - 343
Target Start/End: Original strand, 14114815 - 14115145
Alignment:
| Q |
13 |
aatatcattgaggagtgggggatggtgcacccttataacgacttttgcatgcatctctcttgagttgttgtttttgtttctttgtctaataaggcatgaa |
112 |
Q |
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| T |
14114815 |
aatatcattgaggagtgggggatggtgcacccttataacgacttttgcatgcatctctcttgagttgttgtttttgtttctttgtctaataaggcgtgaa |
14114914 |
T |
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| Q |
113 |
aggaggtttagctccattttctttcatatcacgaatttgtataaataactatactcccttttgtaccaacggattgctatgtttcaccacttcggaatca |
212 |
Q |
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| T |
14114915 |
aggaggtttagctccattttctttcatatcacgaatttgcataaataacttcactcccttttgtaacaacggattgctatatttcacaactgtggaatta |
14115014 |
T |
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| Q |
213 |
tcatttaccatatgagtcttcggcagtgtcacctctaataaagagtaagttttcgagtttaatgaaggtgcatcttacacgtcagcgtgcgctacaagct |
312 |
Q |
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| T |
14115015 |
tcatttaccatatgagtcttcgacactgtcacctcaaataaagagtaaggtttcgagtttaatgaaggtgcatcttacacgtcagcgtgcgctacaagct |
14115114 |
T |
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| Q |
313 |
ctttttgagaaatggcttgaacaaccaaatc |
343 |
Q |
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| T |
14115115 |
ctttttgagaaatggcttgaacaaccaaatc |
14115145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 26888683 - 26888810
Alignment:
| Q |
24 |
ggagtgggggatggtgcacccttataacgacttttgcatgcatctctcttgagttgttgtttttgtttctttgtctaataaggcatgaaaggaggtttag |
123 |
Q |
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| T |
26888683 |
ggagtggaggatggtgcacccttagaatgggttatgtaagcatctatcttgtgttgttgtttttgtttctttgtcaaataaggagtgaaaggaggttcag |
26888782 |
T |
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| Q |
124 |
ctccattttctttcatatcacgaatttg |
151 |
Q |
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| T |
26888783 |
tttcattttcttgcatatcacgaatttg |
26888810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 25781354 - 25781535
Alignment:
| Q |
13 |
aatatcattgaggagtgggggatggtgcacccttataacgacttttgcatgcatctctcttgagttgttgtttttgtttctttgtctaataaggcatgaa |
112 |
Q |
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| T |
25781354 |
aatatcattgaggagtagaggatggtgcacccttagaacgggttctatataca--tctcttgagttgttgtttttgtttctttgaaaaataaggcatg-a |
25781450 |
T |
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| Q |
113 |
aggaggtttagctccattttctttcatatcacgaatttgtataaataactatactcccttttgtaccaacggattgctatgtttc |
197 |
Q |
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| T |
25781451 |
aggaggttcaactccattttcttgcatatcacaaattcgcataagcaactcgacttccttctgtaacaatggatttctatgtttc |
25781535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 15 - 151
Target Start/End: Original strand, 19900659 - 19900795
Alignment:
| Q |
15 |
tatcattgaggagtgggggatggtgcacccttataacgacttttgcatgcatctctcttgagttgttgtttttgtttctttgtctaataaggcatgaaag |
114 |
Q |
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| T |
19900659 |
tatcattgagaagtgggggatgaagcacccttagaacgggttatgtaggcatctctcttgagttgttgcttctgtttctttgtcaaatagggcccgaaag |
19900758 |
T |
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| Q |
115 |
gaggtttagctccattttctttcatatcacgaatttg |
151 |
Q |
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| T |
19900759 |
gaagttcagctccattttcttgcttatctcgaatttg |
19900795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 28683668 - 28683745
Alignment:
| Q |
21 |
tgaggagtgggggatggtgcacccttataacgacttttgcatgcatctctcttgagttgttgtttttgtttctttgtc |
98 |
Q |
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| T |
28683668 |
tgaggagtggggggcggtgcaccctttgagcgagttctgtatgcatttctcttgagttgttgcttttatttctttgtc |
28683745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 9403971 - 9404013
Alignment:
| Q |
17 |
tcattgaggagtgggggatggtgcacccttataacgacttttg |
59 |
Q |
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| T |
9403971 |
tcattgaggactgggggatggtgcacccttagaacgagttttg |
9404013 |
T |
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