View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16276_low_1 (Length: 213)

Name: NF16276_low_1
Description: NF16276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16276_low_1
NF16276_low_1
[»] chr3 (2 HSPs)
chr3 (4-186)||(45382702-45382894)
chr3 (103-149)||(47362558-47362604)
[»] chr6 (12 HSPs)
chr6 (98-178)||(27661703-27661783)
chr6 (98-135)||(26650237-26650274)
chr6 (98-135)||(26756205-26756242)
chr6 (94-134)||(12627824-12627864)
chr6 (98-138)||(29449688-29449728)
chr6 (23-73)||(8148268-8148318)
chr6 (26-79)||(20809178-20809231)
chr6 (98-127)||(28783014-28783043)
chr6 (80-137)||(34057962-34058019)
chr6 (24-60)||(29670971-29671007)
chr6 (101-137)||(30537508-30537544)
chr6 (26-74)||(31811989-31812037)
[»] chr7 (4 HSPs)
chr7 (98-138)||(43160491-43160531)
chr7 (89-136)||(10893872-10893919)
chr7 (98-140)||(650524-650566)
chr7 (98-134)||(18750887-18750923)
[»] chr5 (4 HSPs)
chr5 (98-137)||(28136673-28136712)
chr5 (98-135)||(645342-645379)
chr5 (89-134)||(11601688-11601733)
chr5 (26-74)||(12478334-12478382)
[»] chr8 (4 HSPs)
chr8 (31-73)||(14229600-14229642)
chr8 (98-138)||(32691750-32691790)
chr8 (89-137)||(41686804-41686852)
chr8 (89-137)||(31681833-31681881)
[»] chr2 (1 HSPs)
chr2 (44-140)||(9956949-9957045)
[»] chr4 (4 HSPs)
chr4 (98-148)||(10164460-10164510)
chr4 (98-136)||(28890768-28890806)
chr4 (94-130)||(29388374-29388410)
chr4 (98-138)||(45615427-45615467)
[»] chr1 (3 HSPs)
chr1 (89-134)||(264615-264660)
chr1 (38-78)||(27835482-27835522)
chr1 (98-134)||(43609830-43609866)


Alignment Details
Target: chr3 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 4 - 186
Target Start/End: Complemental strand, 45382894 - 45382702
Alignment:
Q  4 tgactaattggtaaataatgaactttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgtcaccaacat------ 97  Q
    |||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||          
T  45382894 tgactaattggtaaataatgaactttgtagcaca-atacttctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgacaccaacatgtcacc 45382796  T
Q  98 -----atgtgattacattcaaatatgttattttcttaaattactactgatgttgacgaatgagtgtcagtgtggagtccggtgttcatgtctct 186  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||    
T  45382795 gacatatgtgattacattcaaatatgttattttcttaaattactactgatgttgacgaatgaatgtcagtgtgaagtccagtgttcatgtctct 45382702  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 47362604 - 47362558
Alignment:
Q  103 attacattcaaatatgttattttcttaaattactactgatgttgacg 149  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||||||    
T  47362604 attacattcaattatgtaattttcttaaattattactgatgttgacg 47362558  T

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Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 98 - 178
Target Start/End: Complemental strand, 27661783 - 27661703
Alignment:
Q  98 atgtgattacattcaaatatgttattttcttaaattactactgatgttgacgaatgagtgtcagtgtggagtccggtgttc 178  Q
    ||||||||||||| |||||| |||||||||||||||||||   |||||||||||| ||||| ||||| |||| ||||||||    
T  27661783 atgtgattacattgaaatatattattttcttaaattactatcaatgttgacgaatcagtgttagtgtcgagttcggtgttc 27661703  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 26650237 - 26650274
Alignment:
Q  98 atgtgattacattcaaatatgttattttcttaaattac 135  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26650237 atgtgattacattcaaatatgttattttcttaaattac 26650274  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 26756205 - 26756242
Alignment:
Q  98 atgtgattacattcaaatatgttattttcttaaattac 135  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26756205 atgtgattacattcaaatatgttattttcttaaattac 26756242  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 12627824 - 12627864
Alignment:
Q  94 acatatgtgattacattcaaatatgttattttcttaaatta 134  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  12627824 acatatatgattacattgaaatatgttattttcttaaatta 12627864  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 29449728 - 29449688
Alignment:
Q  98 atgtgattacattcaaatatgttattttcttaaattactac 138  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  29449728 atgtgattacattcaattatgttattttctgaaattactac 29449688  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 8148268 - 8148318
Alignment:
Q  23 gaactttgtagcacagacatttctgatcgaaggcatgtccggtgtccgaca 73  Q
    ||||| |||||||| |||||||| ||| ||||||||||| |||||||||||    
T  8148268 gaactatgtagcaccgacatttccgatggaaggcatgtctggtgtccgaca 8148318  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 20809178 - 20809231
Alignment:
Q  26 ctttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacatttgtc 79  Q
    ||||||||||  |||| ||  |||||||||||||||||||||||||||| ||||    
T  20809178 ctttgtagcatcgacactttggatcgaaggcatgtccggtgtccgacatgtgtc 20809231  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 127
Target Start/End: Original strand, 28783014 - 28783043
Alignment:
Q  98 atgtgattacattcaaatatgttattttct 127  Q
    ||||||||||||||||||||||||||||||    
T  28783014 atgtgattacattcaaatatgttattttct 28783043  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 34058019 - 34057962
Alignment:
Q  80 tgtgtctgtcaccaacatatgtgattacattcaaatatgttattttcttaaattacta 137  Q
    |||||||| |||| ||| ||||||||||| |||| ||||| ||||||||| |||||||    
T  34058019 tgtgtctgacaccgacacatgtgattacagtcaattatgtcattttcttatattacta 34057962  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 29671007 - 29670971
Alignment:
Q  24 aactttgtagcacagacatttctgatcgaaggcatgt 60  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  29671007 aactttgtaccaccgacatttctgatcgaaggcatgt 29670971  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 30537544 - 30537508
Alignment:
Q  101 tgattacattcaaatatgttattttcttaaattacta 137  Q
    |||| |||||||| |||||||||||||||||||||||    
T  30537544 tgataacattcaattatgttattttcttaaattacta 30537508  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 31812037 - 31811989
Alignment:
Q  26 ctttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacat 74  Q
    ||||||||||| ||||  ||||||| ||||||||||| |||||||||||    
T  31812037 ctttgtagcactgacacctctgatcaaaggcatgtccagtgtccgacat 31811989  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 43160531 - 43160491
Alignment:
Q  98 atgtgattacattcaaatatgttattttcttaaattactac 138  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  43160531 atgtgattacattcaattatgttattttcttaaattactac 43160491  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 10893872 - 10893919
Alignment:
Q  89 caccaacatatgtgattacattcaaatatgttattttcttaaattact 136  Q
    |||||||| |||||||||||||||| ||||| ||||||||||||||||    
T  10893872 caccaacacatgtgattacattcaattatgtcattttcttaaattact 10893919  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 650566 - 650524
Alignment:
Q  98 atgtgattacattcaaatatgttattttcttaaattactactg 140  Q
    |||||||| ||||||| ||||| ||||||||||||||||||||    
T  650566 atgtgattgcattcaattatgtcattttcttaaattactactg 650524  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 18750923 - 18750887
Alignment:
Q  98 atgtgattacattcaaatatgttattttcttaaatta 134  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  18750923 atgtgattacattcaattatgtcattttcttaaatta 18750887  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 28136712 - 28136673
Alignment:
Q  98 atgtgattacattcaaatatgttattttcttaaattacta 137  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  28136712 atgtgattacattgaaatatgttattttcttaaattacta 28136673  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 645379 - 645342
Alignment:
Q  98 atgtgattacattcaaatatgttattttcttaaattac 135  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  645379 atgtgattacattcaattatgtcattttcttaaattac 645342  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 11601733 - 11601688
Alignment:
Q  89 caccaacatatgtgattacattcaaatatgttattttcttaaatta 134  Q
    ||||||||||||||||||||||||| ||  ||| ||||||||||||    
T  11601733 caccaacatatgtgattacattcaattaatttagtttcttaaatta 11601688  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 12478382 - 12478334
Alignment:
Q  26 ctttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacat 74  Q
    ||||||||||| |||||||||||| |||||| |||| |||||| |||||    
T  12478382 ctttgtagcaccgacatttctgatggaaggcgtgtctggtgtctgacat 12478334  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 14229642 - 14229600
Alignment:
Q  31 tagcacagacatttctgatcgaaggcatgtccggtgtccgaca 73  Q
    |||||| |||| |||||||||||||||||||||||||||||||    
T  14229642 tagcactgacacttctgatcgaaggcatgtccggtgtccgaca 14229600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 32691790 - 32691750
Alignment:
Q  98 atgtgattacattcaaatatgttattttcttaaattactac 138  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  32691790 atgtgattacattcaattatgtcattttcttaaattactac 32691750  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 41686804 - 41686852
Alignment:
Q  89 caccaacatatgtgattacattcaaatatgttattttcttaaattacta 137  Q
    |||||||| ||||||||| | |||| |||||||||||||||||||||||    
T  41686804 caccaacacatgtgattagactcaactatgttattttcttaaattacta 41686852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 31681833 - 31681881
Alignment:
Q  89 caccaacatatgtgattacattcaaatatgttattttcttaaattacta 137  Q
    |||| ||| |||||||| ||||||| ||||| |||||||||||||||||    
T  31681833 caccgacacatgtgatttcattcaattatgtcattttcttaaattacta 31681881  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 140
Target Start/End: Original strand, 9956949 - 9957045
Alignment:
Q  44 tctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgtcaccaacatatgtgattacattcaaatatgttattttcttaaattactactg 140  Q
    ||||||| ||||||||||||||||| ||||| |||| ||||| | |||  ||| |||| ||||| ||||||||  ||||||| | |||||| |||||    
T  9956949 tctgatcaaaggcatgtccggtgtctgacatgtgtcggtgtccggcacggacacatgtcattacgttcaaataatttattttgtcaaattattactg 9957045  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 10164510 - 10164460
Alignment:
Q  98 atgtgattacattcaaatatgttattttcttaaattactactgatgttgac 148  Q
    |||||||||||||||| ||||  |||||||||||||||||| | |||||||    
T  10164510 atgtgattacattcaattatgccattttcttaaattactaccggtgttgac 10164460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 136
Target Start/End: Complemental strand, 28890806 - 28890768
Alignment:
Q  98 atgtgattacattcaaatatgttattttcttaaattact 136  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  28890806 atgtgattgcattcaattatgttattttcttaaattact 28890768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 29388374 - 29388410
Alignment:
Q  94 acatatgtgattacattcaaatatgttattttcttaa 130  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  29388374 acatatgtgattacattcaattatgtcattttcttaa 29388410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 45615427 - 45615467
Alignment:
Q  98 atgtgattacattcaaatatgttattttcttaaattactac 138  Q
    |||||||||| ||||| ||||| ||||||||||||||||||    
T  45615427 atgtgattacgttcaattatgtcattttcttaaattactac 45615467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 264660 - 264615
Alignment:
Q  89 caccaacatatgtgattacattcaaatatgttattttcttaaatta 134  Q
    |||||||| ||||||||||||| || ||||||| ||||||||||||    
T  264660 caccaacacatgtgattacatttaagtatgttactttcttaaatta 264615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 27835522 - 27835482
Alignment:
Q  38 gacatttctgatcgaaggcatgtccggtgtccgacatttgt 78  Q
    |||| ||||||| ||||||||||| ||||||||||||||||    
T  27835522 gacacttctgattgaaggcatgtctggtgtccgacatttgt 27835482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 43609830 - 43609866
Alignment:
Q  98 atgtgattacattcaaatatgttattttcttaaatta 134  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  43609830 atgtgattacattcaattatgttattttctcaaatta 43609866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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