View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16277_low_4 (Length: 237)

Name: NF16277_low_4
Description: NF16277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16277_low_4
NF16277_low_4
[»] chr4 (18 HSPs)
chr4 (1-222)||(6770370-6770591)
chr4 (1-221)||(6592165-6592382)
chr4 (1-221)||(6793298-6793515)
chr4 (25-221)||(6833270-6833466)
chr4 (2-221)||(6625796-6626012)
chr4 (1-222)||(6549327-6549545)
chr4 (1-221)||(6716359-6716576)
chr4 (1-221)||(6749802-6750019)
chr4 (26-221)||(6812699-6812889)
chr4 (25-221)||(6648023-6648219)
chr4 (1-221)||(6537003-6537220)
chr4 (25-137)||(6667107-6667219)
chr4 (58-221)||(6501290-6501453)
chr4 (25-221)||(6712619-6712812)
chr4 (25-221)||(7889622-7889818)
chr4 (25-87)||(10034736-10034798)
chr4 (25-191)||(21227108-21227274)
chr4 (165-221)||(10034853-10034909)
[»] scaffold0552 (1 HSPs)
scaffold0552 (26-221)||(171-361)
[»] chr7 (5 HSPs)
chr7 (25-221)||(18925427-18925623)
chr7 (25-221)||(34719816-34720012)
chr7 (61-221)||(34734281-34734441)
chr7 (24-205)||(34729733-34729914)
chr7 (66-140)||(34715134-34715208)
[»] scaffold0813 (1 HSPs)
scaffold0813 (165-221)||(2100-2156)
[»] scaffold0373 (1 HSPs)
scaffold0373 (114-191)||(12773-12850)


Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 6770370 - 6770591
Alignment:
Q  1 cagccaaagatatacgatgtgtacttcttgagttttagaggggtagacagtcgttcgaagttcatttcacatctctattcctctcttcaaaattcagcta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6770370 cagccaaagatatacgatgtgtacttcttgagttttagaggggtagacaatcgttcgaagttcatttcacatctctattcctctcttcaaaattcagcta 6770469  T
Q  101 tttttgcttttagagacgatgatgagcttcaacgaggagagcatatatcaatggcactgttgcgagcaattggacagtctagaatttctatagttgtttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6770470 tttttgcttttagagacgatgatgagcttcaacgaggagagcatatatcaatcgcactgttgcgagcaattggacagtctagaatttctatagttgtttt 6770569  T
Q  201 ctctacaaattatgctaattct 222  Q
    ||||||||||||||||||||||    
T  6770570 ctctacaaattatgctaattct 6770591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 6592382 - 6592165
Alignment:
Q  1 cagccaaagatatacgatgtgtacttcttgagttttagaggggtagacagtcgttcgaagttcatttcacatctctattcctctcttcaaaattcagcta 100  Q
    ||||||||||| || |||||||   |||||||||| ||||| | ||||| |||  | |||||||| ||||||||||||||||||||||||||| | |  |    
T  6592382 cagccaaagatgtatgatgtgt---tcttgagtttcagaggagaagacaatcgggcaaagttcatgtcacatctctattcctctcttcaaaatgcgggga 6592286  T
Q  101 tttttgcttttagagacgatgatgagcttcaacgaggagagcatatatcaatggcactgttgcgagcaattggacagtctagaatttctatagttgtttt 200  Q
    ||| || ||| ||||||||||| ||| ||||||||||||| ||||| |||||  |||||||||||||||||| ||||||||||| || ||| ||||||||    
T  6592285 tttatgttttcagagacgatgacgagattcaacgaggagatcatatctcaatctcactgttgcgagcaattgaacagtctagaacttgtatcgttgtttt 6592186  T
Q  201 ctctacaaattatgctaattc 221  Q
     ||||||||||||||||||||    
T  6592185 gtctacaaattatgctaattc 6592165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 6793298 - 6793515
Alignment:
Q  1 cagccaaagatatacgatgtgtacttcttgagttttagaggggtagacagtcgttcgaagttcatttcacatctctattcctctcttcaaaattcagcta 100  Q
    ||||||||||| || |||||||   |||||||||| ||||||| ||||| |||  | |||||  | ||||||||||||||||| ||||||||| |||  |    
T  6793298 cagccaaagatgtatgatgtgt---tcttgagtttcagaggggaagacaatcgggcaaagtttgtgtcacatctctattcctcccttcaaaatgcaggga 6793394  T
Q  101 tttttgcttttagagacgatgatgagcttcaacgaggagagcatatatcaatggcactgttgcgagcaattggacagtctagaatttctatagttgtttt 200  Q
    ||  || ||| | ||||||||||||| ||||||||||||| ||||| |||||  ||||||||||||||||||||||||||||||||||||| ||||| ||    
T  6793395 ttcatgttttcaaagacgatgatgagattcaacgaggagatcatatctcaatctcactgttgcgagcaattggacagtctagaatttctattgttgtgtt 6793494  T
Q  201 ctctacaaattatgctaattc 221  Q
     ||||||||||| || |||||    
T  6793495 gtctacaaattacgccaattc 6793515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 25 - 221
Target Start/End: Original strand, 6833270 - 6833466
Alignment:
Q  25 ttcttgagttttagaggggtagacagtcgttcgaagttcatttcacatctctattcctctcttcaaaattcagctatttttgcttttagagacgatgatg 124  Q
    ||||||||||| ||||||| ||| |||||| | |||||||| |||||||||| ||||||||||||||||  ||  |||  |||||| | ||||||| | |    
T  6833270 ttcttgagtttcagaggggaagatagtcgtgcaaagttcatgtcacatctcttttcctctcttcaaaatgaagggattcatgctttcaaagacgataacg 6833369  T
Q  125 agcttcaacgaggagagcatatatcaatggcactgttgcgagcaattggacagtctagaatttctatagttgttttctctacaaattatgctaattc 221  Q
    || ||||||||||||| || || |||||  ||||||||||||||||||| |||||||||||||||||  ||||||| |||||||||||||| |||||    
T  6833370 agattcaacgaggagatcagatctcaatctcactgttgcgagcaattgggcagtctagaatttctatcattgttttgtctacaaattatgccaattc 6833466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 2 - 221
Target Start/End: Complemental strand, 6626012 - 6625796
Alignment:
Q  2 agccaaagatatacgatgtgtacttcttgagttttagaggggtagacagtcgttcgaagttcatttcacatctctattcctctcttcaaaattcagctat 101  Q
    |||||||||| ||||||||||   |||||||||| ||||||| |||||||||| | ||||||||||||||||||||||| |||||||||||| | |  ||    
T  6626012 agccaaagatgtacgatgtgt---tcttgagtttcagaggggaagacagtcgtgcaaagttcatttcacatctctattcatctcttcaaaatgccgggat 6625916  T
Q  102 ttttgcttttagagacgatgatgagcttcaacgaggagagcatatatcaatggcactgttgcgagcaattggacagtctagaatttctatagttgttttc 201  Q
    || || ||| | |||||| |||||  |||||||||| || || || |||||  |||| ||||||||||| ||||| |||||||||| ||| || |||||     
T  6625915 ttatgttttcaaagacgacgatgaaattcaacgaggcgatcagatctcaatttcactattgcgagcaatcggacactctagaatttttattgtggtttta 6625816  T
Q  202 tctacaaattatgctaattc 221  Q
    |||||||| |||||||||||    
T  6625815 tctacaaactatgctaattc 6625796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 6549545 - 6549327
Alignment:
Q  1 cagccaaagatatacgatgtgtacttcttgagttttagaggggtagacagtcgttcgaagttcatttcacatctctattcctctcttcaaaattcagcta 100  Q
    ||||||||||| ||||| ||   ||||||||||||  |||||| ||| |||||| |||| ||||||||||||||  ||||||||||| ||||| |||  |    
T  6549545 cagccaaagatgtacgacgt---cttcttgagtttccgaggggaagatagtcgtgcgaaattcatttcacatctgcattcctctcttgaaaatgcaggga 6549449  T
Q  101 tttttgcttttagagacgatgatgagcttcaacgaggagagcatatatcaatggcactgttgcgagcaattggacagtctagaatttctatagttgtttt 200  Q
    ||  || ||| | |||||||    || ||||||||||||| || ||||||||  ||||||| ||||||||||||||||||||||||| ||| ||||||||    
T  6549448 ttcatgttttcaaagacgatttcaagattcaacgaggagatcagatatcaatctcactgtttcgagcaattggacagtctagaatttgtatcgttgtttt 6549349  T
Q  201 ctctacaaattatgctaattct 222  Q
     |||| ||||||||||||||||    
T  6549348 gtctaaaaattatgctaattct 6549327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 6716359 - 6716576
Alignment:
Q  1 cagccaaagatatacgatgtgtacttcttgagttttagaggggtagacagtcgttcgaagttcatttcacatctctattcctctcttcaaaattcagcta 100  Q
    ||||||||||| ||||||||||   |||||||||| ||||||| ||||| |||| | | |||||| ||||||||| ||||||||||||| | | |||  |    
T  6716359 cagccaaagatgtacgatgtgt---tcttgagtttcagaggggaagacaatcgtccaaggttcatatcacatctccattcctctcttcacagtgcaggga 6716455  T
Q  101 tttttgcttttagagacgatgatgagcttcaacgaggagagcatatatcaatggcactgttgcgagcaattggacagtctagaatttctatagttgtttt 200  Q
    ||| |||||| | |||||| |||| | ||||||||||||| || || ||  |  |||||  |  |||||||| |||||||||||||||||| ||||||||    
T  6716456 tttatgctttcaaagacgacgatgggattcaacgaggagatcaaatctcggtctcactggggaaagcaattgaacagtctagaatttctatcgttgtttt 6716555  T
Q  201 ctctacaaattatgctaattc 221  Q
     ||||||||||||||||||||    
T  6716556 gtctacaaattatgctaattc 6716576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 6749802 - 6750019
Alignment:
Q  1 cagccaaagatatacgatgtgtacttcttgagttttagaggggtagacagtcgttcgaagttcatttcacatctctattcctctcttcaaaattcagcta 100  Q
    ||||||||||| ||||||||||   |||||||||| ||||| |  ||||||||| | || ||||||||||||||  |||| |||||||||||| |||| |    
T  6749802 cagccaaagatgtacgatgtgt---tcttgagtttcagaggagacgacagtcgtgcaaaattcatttcacatctgcattcttctcttcaaaatgcagcga 6749898  T
Q  101 tttttgcttttagagacgatgatgagcttcaacgaggagagcatatatcaatggcactgttgcgagcaattggacagtctagaatttctatagttgtttt 200  Q
    ||  ||  ||   ||||||||| ||| ||||||||||||| || ||||| ||  | ||||| |||||||||| |||||||||||||||||| ||||||||    
T  6749899 ttcatgtcttccaagacgatgacgagattcaacgaggagatcaaatatcgatatcgctgttccgagcaattgaacagtctagaatttctatcgttgtttt 6749998  T
Q  201 ctctacaaattatgctaattc 221  Q
     |||||||  |||||||||||    
T  6749999 gtctacaagctatgctaattc 6750019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 26 - 221
Target Start/End: Original strand, 6812699 - 6812889
Alignment:
Q  26 tcttgagttttagaggggtagacagtcgttcgaagttcatttcacatctctattcctctcttcaaaattcagctatttttgcttttagagacgatgatga 125  Q
    ||||||||||||||||||  ||||||||| |||| |||||||| ||| | |||||||||||||||||| | |  |||| |||||| |||   |||| |||    
T  6812699 tcttgagttttagaggggatgacagtcgtgcgaaattcatttcccatttgtattcctctcttcaaaatgcggggatttatgctttcaga---gatgctga 6812795  T
Q  126 gcttcaacgaggagagcatatatcaatggcactgttgcgagcaattggacagtctagaatttctatagttgttttctctacaaattatgctaattc 221  Q
    | ||||||||||||| ||||| |||||  | ||||||  ||||||||||  |||||||||||||||||||||||| || | |||||||||||||||    
T  6812796 gattcaacgaggagatcatatctcaat--ctctgttgaaagcaattggatggtctagaatttctatagttgttttatcgataaattatgctaattc 6812889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 221
Target Start/End: Original strand, 6648023 - 6648219
Alignment:
Q  25 ttcttgagttttagaggggtagacagtcgttcgaagttcatttcacatctctattcctctcttcaaaattcagctatttttgcttttagagacgatgatg 124  Q
    ||||||||||||||||||| |||||| ||| | |||||||| |||||| ||| ||| ||||| |||||| |||  |||  | |||| ||||| ||||||     
T  6648023 ttcttgagttttagaggggaagacagccgtgcaaagttcatgtcacatatcttttcatctctgcaaaatgcagggattcatactttcagagatgatgatc 6648122  T
Q  125 agcttcaacgaggagagcatatatcaatggcactgttgcgagcaattggacagtctagaatttctatagttgttttctctacaaattatgctaattc 221  Q
    || |||| |||||||| || || ||| |  |||||||||||||||| ||||| ||||||||||| ||  || |||| ||||||||||||||||||||    
T  6648123 agattcagcgaggagatcaaatctcagtctcactgttgcgagcaatcggacaatctagaatttccatcattattttgtctacaaattatgctaattc 6648219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 6537220 - 6537003
Alignment:
Q  1 cagccaaagatatacgatgtgtacttcttgagttttagaggggtagacagtcgttcgaagttcatttcacatctctattcctctcttcaaaattcagcta 100  Q
    ||||||||||| || |||||||   | ||||||||||||||||  |||||||||  ||| ||| |||||||| |  ||||||||||||||||||| || |    
T  6537220 cagccaaagatgtatgatgtgt---ttttgagttttagaggggacgacagtcgtgtgaaattcgtttcacatttgaattcctctcttcaaaattccgcga 6537124  T
Q  101 tttttgcttttagagacgatgatgagcttcaacgaggagagcatatatcaatggcactgttgcgagcaattggacagtctagaatttctatagttgtttt 200  Q
    ||  || ||| | ||||||||| ||| |  |||||||||| || || |||||  ||||||||||||||||||||| |||||||||| |  | ||||||||    
T  6537123 ttcatgttttcaaagacgatgacgagatcgaacgaggagatcagatctcaatatcactgttgcgagcaattggacggtctagaattgccctcgttgtttt 6537024  T
Q  201 ctctacaaattatgctaattc 221  Q
     |||| ||| |||||||||||    
T  6537023 gtctaaaaaatatgctaattc 6537003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 6667107 - 6667219
Alignment:
Q  25 ttcttgagttttagaggggtagacagtcgttcgaagttcatttcacatctctattcctctcttcaaaattcagctatttttgcttttagagacgatgatg 124  Q
    ||||||||||| ||||||| ||| |||||| | |||||||| ||||| |||||||| |||||||||||| | | ||||| | |||| ||||| |||||||    
T  6667107 ttcttgagtttcagaggggaagaaagtcgtgcaaagttcatgtcacacctctattcttctcttcaaaatgcgggtatttatactttcagagatgatgatg 6667206  T
Q  125 agcttcaacgagg 137  Q
    || ||||||||||    
T  6667207 agattcaacgagg 6667219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 221
Target Start/End: Complemental strand, 6501453 - 6501290
Alignment:
Q  58 aagttcatttcacatctctattcctctcttcaaaattcagctatttttgcttttagagacgatgatgagcttcaacgaggagagcatatatcaatggcac 157  Q
    |||||||| |||||||| ||| |||||||||||||| |||  |||| | |||| ||||| ||||| ||| ||||  ||||||| |  || |||||| |||    
T  6501453 aagttcatatcacatctttatacctctcttcaaaatgcaggaatttatactttcagagatgatgacgagattcagagaggagatcgaatctcaatgtcac 6501354  T
Q  158 tgttgcgagcaattggacagtctagaatttctatagttgttttctctacaaattatgctaattc 221  Q
    | |||  |||||| || | ||||||||||||||| |||||||| ||||||| |||||| |||||    
T  6501353 tattgaaagcaatcgggcggtctagaatttctattgttgttttgtctacaacttatgccaattc 6501290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 221
Target Start/End: Original strand, 6712619 - 6712812
Alignment:
Q  25 ttcttgagttttagaggggtagacagtcgttcgaagttcatttcacatctctattcctctcttcaaaattcagctatttttgcttttagagacgatgatg 124  Q
    ||||||||||| |||||||  ||| || || | || ||| ||||||||||  |||| |||||||||||| |||  |||| || ||| ||||    ||| |    
T  6712619 ttcttgagtttcagaggggacgacggtagtgcaaaattcgtttcacatctgcattcttctcttcaaaatgcagggatttctgttttcagagg---tgacg 6712715  T
Q  125 agcttcaacgaggagagcatatatcaatggcactgttgcgagcaattggacagtctagaatttctatagttgttttctctacaaattatgctaattc 221  Q
    || |||||| ||||||  |||| |||||  ||||||| ||||||||| |||| || |||||||||||||||||||| || | |||||||||||||||    
T  6712716 agattcaacaaggagatgatatctcaatctcactgttacgagcaattcgacactcaagaatttctatagttgttttgtcgataaattatgctaattc 6712812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 221
Target Start/End: Complemental strand, 7889818 - 7889622
Alignment:
Q  25 ttcttgagttttagaggggtagacagtcgttcgaagttcatttcacatctctattcctctcttcaaaattcagctatttttgcttttagagacgatgatg 124  Q
    ||||||||||| ||||||| |||| ||||  | || |||||||||||||| |||  ||||||||||||||| |   ||| || ||| | |||||||||||    
T  7889818 ttcttgagtttcagaggggaagactgtcgagcaaaattcatttcacatctatatatctctcttcaaaattccgggctttatgttttcaaagacgatgatg 7889719  T
Q  125 agcttcaacgaggagagcatatatcaatggcactgttgcgagcaattggacagtctagaatttctatagttgttttctctacaaattatgctaattc 221  Q
     | ||||||||||||| || || ||| | |||||  | | |||  | |||||||||| ||||||||| |||||| | |||| ||| | |||||||||    
T  7889718 ggattcaacgaggagatcagatctcagtcgcactaatccaagctgtcggacagtctaaaatttctattgttgttctgtctaaaaactttgctaattc 7889622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 10034736 - 10034798
Alignment:
Q  25 ttcttgagttttagaggggtagacagtcgttcgaagttcatttcacatctctattcctctctt 87  Q
    ||||||||||| ||||||| ||||| |||  |||| |||||||||||||||||||||||||||    
T  10034736 ttcttgagtttcagaggggaagacattcgcgcgaaattcatttcacatctctattcctctctt 10034798  T

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Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 191
Target Start/End: Original strand, 21227108 - 21227274
Alignment:
Q  25 ttcttgagttttagaggggtagacagtcgttcgaagttcatttcacatctctattcctctcttcaaaattcagctatttttgcttttagagacgatgatg 124  Q
    ||||||||||| ||||||| ||| |||| |  ||| ||||||||||||||| |||||||||||| |||| | |  |||| || ||| | |||||| ||||    
T  21227108 ttcttgagtttcagaggggaagaaagtcatgtgaaattcatttcacatctcaattcctctcttcgaaatgctgggatttatgttttcaaagacgacgatg 21227207  T
Q  125 agcttcaacgaggagagcatatatcaatggcactgttgcgagcaattggacagtctagaatttctat 191  Q
     | |  |||||||||| || || |||    |||| |||| |||||| ||||||||||||||||||||    
T  21227208 ggatagaacgaggagatcagatctcaggctcactcttgcaagcaatcggacagtctagaatttctat 21227274  T

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Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 10034853 - 10034909
Alignment:
Q  165 agcaattggacagtctagaatttctatagttgttttctctacaaattatgctaattc 221  Q
    ||||||||| ||||||||||||||||| ||||| || |||| ||||| |||||||||    
T  10034853 agcaattggtcagtctagaatttctattgttgtattgtctagaaattttgctaattc 10034909  T

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Target: scaffold0552 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 26 - 221
Target Start/End: Original strand, 171 - 361
Alignment:
Q  26 tcttgagttttagaggggtagacagtcgttcgaagttcatttcacatctctattcctctcttcaaaattcagctatttttgcttttagagacgatgatga 125  Q
    ||||||||||||||||||  ||||||||| |||| |||||||| ||| | |||||||||||||||||| | |  |||| |||||| |||   |||| |||    
T  171 tcttgagttttagaggggatgacagtcgtgcgaaattcatttcccatttgtattcctctcttcaaaatgcggggatttatgctttcaga---gatgctga 267  T
Q  126 gcttcaacgaggagagcatatatcaatggcactgttgcgagcaattggacagtctagaatttctatagttgttttctctacaaattatgctaattc 221  Q
    | ||||||||||||| ||||| |||||  | ||||||  ||||||||||  |||||||||||||||||||||||| || | |||||||||||||||    
T  268 gattcaacgaggagatcatatctcaat--ctctgttgaaagcaattggatggtctagaatttctatagttgttttatcgataaattatgctaattc 361  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 221
Target Start/End: Original strand, 18925427 - 18925623
Alignment:
Q  25 ttcttgagttttagaggggtagacagtcgttcgaagttcatttcacatctctattcctctcttcaaaattcagctatttttgcttttagagacgatgatg 124  Q
    ||||||||||| |||||| ||||  ||||| | || |||||||||||||||||| | |||||||||||| | | ||||  || ||| | |||| ||||||    
T  18925427 ttcttgagtttcagagggatagattgtcgtgcaaaattcatttcacatctctatacttctcttcaaaatgccggtattcatgttttcaaagacaatgatg 18925526  T
Q  125 agcttcaacgaggagagcatatatcaatggcactgttgcgagcaattggacagtctagaatttctatagttgttttctctacaaattatgctaattc 221  Q
    || ||||||||||||| || || ||| |  |||| |||  |||||||| | ||| ||||||||||||||||||||| ||||  ||||||||||||||    
T  18925527 agattcaacgaggagatcagatctcattctcacttttgaaagcaattgaagagtgtagaatttctatagttgttttgtctagtaattatgctaattc 18925623  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 221
Target Start/End: Complemental strand, 34720012 - 34719816
Alignment:
Q  25 ttcttgagttttagaggggtagacagtcgttcgaagttcatttcacatctctattcctctcttcaaaattcagctatttttgcttttagagacgatgatg 124  Q
    ||||||||||| ||||||| ||| | |||| | |  |||||||||||||||||| |||||||||||||| |    |||  || ||||||||||||| |||    
T  34720012 ttcttgagtttcagaggggaagatactcgtgcaagattcatttcacatctctatacctctcttcaaaatgctagaattaatgtttttagagacgataatg 34719913  T
Q  125 agcttcaacgaggagagcatatatcaatggcactgttgcgagcaattggacagtctagaatttctatagttgttttctctacaaattatgctaattc 221  Q
    || |||| ||||| || || || ||  |  ||||||||||||||||||| |||||||||||||||||  |||| || ||||  |||||||| |||||    
T  34719912 agattcagcgaggtgatcagatctcggtctcactgttgcgagcaattgggcagtctagaatttctattattgtattgtctagtaattatgcaaattc 34719816  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 61 - 221
Target Start/End: Complemental strand, 34734441 - 34734281
Alignment:
Q  61 ttcatttcacatctctattcctctcttcaaaattcagctatttttgcttttagagacgatgatgagcttcaacgaggagagcatatatcaatggcactgt 160  Q
    |||||||||||||||||| |  | ||| ||||| | |  |||| || |||||||| |||||||||| |||||||||| || ||  | ||| || || |||    
T  34734441 ttcatttcacatctctatacggcccttgaaaatgctggaatttatgtttttagaggcgatgatgagattcaacgaggtgatcaggtctcagtgtcattgt 34734342  T
Q  161 tgcgagcaattggacagtctagaatttctatagttgttttctctacaaattatgctaattc 221  Q
    ||| ||| || ||||||||||||||||||||  ||||||| |||| ||| |||||||||||    
T  34734341 tgcaagccataggacagtctagaatttctatcattgttttgtctagaaactatgctaattc 34734281  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 34729914 - 34729733
Alignment:
Q  24 cttcttgagttttagaggggtagacagtcgttcgaagttcatttcacatctctattcctctcttcaaaattcagctatttttgcttttagagacgatgat 123  Q
    ||||||||||||  |||||   |||| |||| | || |||||||||||||||||| |  ||||| ||||| | |  |||| || ||||||||| ||||||    
T  34729914 cttcttgagtttccgagggaacgacactcgtgcaaaattcatttcacatctctatacagctcttgaaaatgctggaatttatgtttttagagatgatgat 34729815  T
Q  124 gagcttcaacgaggagagcatatatcaatggcactgttgcgagcaattggacagtctagaatttctatagttgttttctcta 205  Q
    ||| |||||||||| || || || |||  | || |||||| ||||||||  ||||||| ||||||||| |||||||| ||||    
T  34729814 gagattcaacgaggtgatcagatctcagcgtcattgttgcaagcaattgagcagtctaaaatttctatcgttgttttgtcta 34729733  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 140
Target Start/End: Complemental strand, 34715208 - 34715134
Alignment:
Q  66 ttcacatctctattcctctcttcaaaattcagctatttttgcttttagagacgatgatgagcttcaacgaggaga 140  Q
    ||||||||||||| |||||||||||||| | |  |||| || ||||||||||||| ||||| |||||| ||||||    
T  34715208 ttcacatctctatacctctcttcaaaatgctggaatttatgtttttagagacgataatgagattcaaccaggaga 34715134  T

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Target: scaffold0813 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0813
Description:

Target: scaffold0813; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 2156 - 2100
Alignment:
Q  165 agcaattggacagtctagaatttctatagttgttttctctacaaattatgctaattc 221  Q
    |||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||    
T  2156 agcaattgaacagtctagaatttctatcgttgttttgtctacaaattatgctaattc 2100  T

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Target: scaffold0373 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 191
Target Start/End: Complemental strand, 12850 - 12773
Alignment:
Q  114 agacgatgatgagcttcaacgaggagagcatatatcaatggcactgttgcgagcaattggacagtctagaatttctat 191  Q
    ||||||||||||| |||| |||||||| ||||| |||||  ||||||  ||| ||||||| |||||||||||||||||    
T  12850 agacgatgatgagattcaccgaggagatcatatctcaatctcactgtgccgaccaattggccagtctagaatttctat 12773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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