View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16277_low_5 (Length: 228)

Name: NF16277_low_5
Description: NF16277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16277_low_5
NF16277_low_5
[»] chr5 (3 HSPs)
chr5 (110-228)||(11334917-11335035)
chr5 (7-115)||(11320703-11320811)
chr5 (7-107)||(24137326-24137426)
[»] chr7 (9 HSPs)
chr7 (23-176)||(26403200-26403353)
chr7 (28-165)||(3889163-3889302)
chr7 (21-165)||(3889420-3889566)
chr7 (21-192)||(3901887-3902058)
chr7 (21-154)||(3901666-3901801)
chr7 (20-93)||(17921493-17921565)
chr7 (98-176)||(10236744-10236822)
chr7 (53-95)||(46963394-46963436)
chr7 (18-66)||(15614543-15614591)
[»] chr1 (6 HSPs)
chr1 (18-115)||(9168020-9168117)
chr1 (18-107)||(2071824-2071914)
chr1 (7-96)||(3774598-3774687)
chr1 (28-101)||(15629658-15629731)
chr1 (20-107)||(2075356-2075444)
chr1 (19-63)||(10354134-10354178)
[»] chr2 (6 HSPs)
chr2 (18-115)||(32290876-32290973)
chr2 (21-96)||(20593701-20593778)
chr2 (21-114)||(38583786-38583879)
chr2 (133-193)||(1173120-1173178)
chr2 (28-107)||(9047948-9048025)
chr2 (53-95)||(8986666-8986708)
[»] chr8 (4 HSPs)
chr8 (119-182)||(32041645-32041708)
chr8 (34-143)||(2098646-2098754)
chr8 (29-96)||(16579079-16579146)
chr8 (29-96)||(16583824-16583891)
[»] chr4 (2 HSPs)
chr4 (12-176)||(7259133-7259292)
chr4 (62-95)||(16871390-16871423)
[»] chr6 (3 HSPs)
chr6 (28-97)||(9290947-9291016)
chr6 (21-115)||(18984248-18984342)
chr6 (129-182)||(18984209-18984262)
[»] chr3 (2 HSPs)
chr3 (28-107)||(50296009-50296088)
chr3 (31-107)||(46691751-46691827)
[»] scaffold0007 (2 HSPs)
scaffold0007 (21-115)||(14549-14643)
scaffold0007 (129-182)||(14629-14682)


Alignment Details
Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 110 - 228
Target Start/End: Original strand, 11334917 - 11335035
Alignment:
Q  110 agaacccaatcaaaccaaaccaaacaaaagaaccgatagagagaaacagccatacaaaagaaccaattgagaggagcaaccaaacataaaaatcaataag 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  11334917 agaacccaatcaaaccaaaccaaacaaaagaaccgatagagagaaacaaccatacaaaagaaccaatagagaggagcaaccaaacagaaaaatcaataag 11335016  T
Q  210 gagaagtgcaattcaatca 228  Q
    |||||||||||||||||||    
T  11335017 gagaagtgcaattcaatca 11335035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 11320703 - 11320811
Alignment:
Q  7 agcagaacctgtggagagcaacaaccaaagtgagttatcatcaaagagagggcaacaagaaccatcaccatcaaccactcaaagagagaaccatctaaac 106  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11320703 agcagaactagtggagagcaacaaccaaagtgagttatcatcaaagagagggcaacaagcaccatcaccatcaaccactcaaagagagaaccatctaaac 11320802  T
Q  107 ataagaacc 115  Q
    |||||||||    
T  11320803 ataagaacc 11320811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 24137426 - 24137326
Alignment:
Q  7 agcagaacctgtggagagcaacaaccaaagtgagttatcatcaaagagagggcaacaagaaccatcaccatcaaccactcaaagagagaaccatctaaac 106  Q
    |||||||||  || |||||| |||||||| ||||||||| ||| |||||| ||| |||||||||||||||||||||| ||||| ||||||||||| ||||    
T  24137426 agcagaaccaatgaagagcagcaaccaaaatgagttatcttcatagagagagcagcaagaaccatcaccatcaaccaatcaaatagagaaccatccaaac 24137327  T
Q  107 a 107  Q
    |    
T  24137326 a 24137326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 26403353 - 26403200
Alignment:
Q  23 agcaacaaccaaagtgagttatcatcaaagagagggcaacaagaaccatcaccatcaaccactcaaagagagaaccatctaaacataagaacccaatcaa 122  Q
    ||||||||||||||| ||||||||||  |||||| | | |||||| ||| ||||||||||| | ||| ||||||||||||||||| ||||||| | ||||    
T  26403353 agcaacaaccaaagttagttatcatcgtagagagagtagcaagaatcattaccatcaaccagttaaatagagaaccatctaaacagaagaaccaagtcaa 26403254  T
Q  123 accaaaccaaacaaaagaaccgatagagagaaacagccatacaaaagaaccaat 176  Q
    |||||||||||||||||||  | | ||||||| |||||||||||||||| ||||    
T  26403253 accaaaccaaacaaaagaattggtggagagaagcagccatacaaaagaatcaat 26403200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 3889302 - 3889163
Alignment:
Q  28 caaccaaagtgagttatcatcaaagagagggcaacaagaaccatcaccatcaaccactcaaagagagaaccatctaaacataagaac-----ccaatcaa 122  Q
    |||||||||||| ||||||| | |||||| ||||||||||  |||| |||||||||  ||||||   ||||||| ||||||||||||     |||| |||    
T  3889302 caaccaaagtgaattatcataatagagagagcaacaagaataatcaacatcaaccaaccaaaga---aaccatccaaacataagaactaagtccaaccaa 3889206  T
Q  123 accaaaccaaacaaaagaaccgatagagagaaacagccataca 165  Q
    |||||||||||||||||||||| ||| ||||| || |||||||    
T  3889205 accaaaccaaacaaaagaaccggtagggagaagcaaccataca 3889163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 165
Target Start/End: Complemental strand, 3889566 - 3889420
Alignment:
Q  21 agagcaacaaccaaagtgagttatcatcaaagagagggcaacaagaaccatcaccatcaaccactcaaagagagaaccatctaaacataagaac-----c 115  Q
    |||||| |||||||||||| ||||||| | |||||| ||||||||||  ||||||||||||||  ||||||   ||||||| ||||||||||||     |    
T  3889566 agagcagcaaccaaagtgaattatcataatagagagagcaacaagaataatcaccatcaaccaaccaaaga---aaccatccaaacataagaactaagtc 3889470  T
Q  116 caatcaaaccaaaccaaacaaaagaaccgatagagagaaacagccataca 165  Q
     ||  |||||||| ||||||||||||||| ||| ||||| || |||||||    
T  3889469 aaacgaaaccaaatcaaacaaaagaaccggtagggagaagcaaccataca 3889420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 192
Target Start/End: Complemental strand, 3902058 - 3901887
Alignment:
Q  21 agagcaacaaccaaagtgagttatcatcaaagagagggcaacaagaaccatcaccatcaaccactcaaagagagaaccatctaaacataagaac-----c 115  Q
    |||||| |||||||||||| |||||||   |||||| ||||||||||  || |||||||||||  ||||||   ||||||| ||||||||||||     |    
T  3902058 agagcagcaaccaaagtgaattatcataggagagagagcaacaagaataataaccatcaaccaaccaaaga---aaccatccaaacataagaactaagtc 3901962  T
Q  116 caatcaaaccaaaccaaacaaaagaaccgatagagagaaacagccatacaaaagaaccaattgagaggagcaaccaa 192  Q
     || ||||| |||||| |||||||||||| ||| ||||| || ||||||| | ||||  | ||||||||||||||||    
T  3901961 aaaccaaactaaaccatacaaaagaaccggtagggagaagcaaccatacatacgaac--aatgagaggagcaaccaa 3901887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 154
Target Start/End: Complemental strand, 3901801 - 3901666
Alignment:
Q  21 agagcaacaaccaaagtgagttatcatcaaagagagggcaacaagaaccatcaccatcaaccactcaaagagagaaccatctaaacataagaac-----c 115  Q
    |||||| |||||||||||| ||||||| | |||||| ||||||||||  ||||||||||||||  ||||||   ||||||  ||||||||||||     |    
T  3901801 agagcatcaaccaaagtgaattatcataatagagagagcaacaagaataatcaccatcaaccaaccaaaga---aaccatacaaacataagaactaagtc 3901705  T
Q  116 caatcaaaccaaaccaaacaaaagaaccgatagagagaa 154  Q
     | |||||||||||| |||||||||| || ||| |||||    
T  3901704 aagtcaaaccaaaccgaacaaaagaatcggtagggagaa 3901666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 17921493 - 17921565
Alignment:
Q  20 gagagcaacaaccaaagtgagttatcatcaaagagagggcaacaagaaccatcaccatcaaccactcaaagaga 93  Q
    ||||||| ||||| |||||||||||||||||  |||| ||  ||||||||||||||||||||||  ||||||||    
T  17921493 gagagcagcaaccgaagtgagttatcatcaat-agagagctccaagaaccatcaccatcaaccagacaaagaga 17921565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 176
Target Start/End: Complemental strand, 10236822 - 10236744
Alignment:
Q  98 catctaaacataagaacccaatcaaaccaaaccaaacaaaagaaccgatagagagaaacagccatacaaaagaaccaat 176  Q
    |||| ||||| ||||||| | |||||| || |||||||||||||||| ||| ||||| || ||||| | ||||||||||    
T  10236822 catccaaacaaaagaaccaagtcaaacaaatccaaacaaaagaaccgctagggagaagcaaccatatagaagaaccaat 10236744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 46963394 - 46963436
Alignment:
Q  53 agagggcaacaagaaccatcaccatcaaccactcaaagagaga 95  Q
    |||| ||| |||||||||||||||||||||| |||||||||||    
T  46963394 agagagcagcaagaaccatcaccatcaaccaatcaaagagaga 46963436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 15614543 - 15614591
Alignment:
Q  18 tggagagcaacaaccaaagtgagttatcatcaaagagagggcaacaaga 66  Q
    ||||||||| |||||||||||||||||| ||  |||||| |||||||||    
T  15614543 tggagagcatcaaccaaagtgagttatcttcgtagagagagcaacaaga 15614591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 9168020 - 9168117
Alignment:
Q  18 tggagagcaacaaccaaagtgagttatcatcaaagagagggcaacaagaaccatcaccatcaaccactcaaagagagaaccatctaaacataagaacc 115  Q
    ||||||||| |||||||||||||||||| ||| |||||| ||| |||||||||||||||| ||||| ||||||||| || |||| ||||| |||||||    
T  9168020 tggagagcagcaaccaaagtgagttatcttcatagagagagcatcaagaaccatcaccattaaccagtcaaagagaaaatcatccaaacaaaagaacc 9168117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 2071824 - 2071914
Alignment:
Q  18 tggagagcaacaaccaaagtgagttatcatcaaagagagggcaacaagaaccatcaccatcaaccactcaaagagag-aaccatctaaaca 107  Q
    ||||||||||||||||||||||||| || |||  ||||| | |||||||||||||||||| |||||  ||||||||| |||||||||||||    
T  2071824 tggagagcaacaaccaaagtgagttgtcgtcattgagagtgtaacaagaaccatcaccattaaccatccaaagagagcaaccatctaaaca 2071914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 3774598 - 3774687
Alignment:
Q  7 agcagaacctgtggagagcaacaaccaaagtgagttatcatcaaagagagggcaacaagaaccatcaccatcaaccactcaaagagagaa 96  Q
    ||||||||  ||||||| |||||||||||||||||  |||||| |||||| |||||||||||||| ||||| |||||  |||||||||||    
T  3774598 agcagaactagtggagatcaacaaccaaagtgagtcgtcatcatagagagtgcaacaagaaccataaccattaaccagccaaagagagaa 3774687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 15629658 - 15629731
Alignment:
Q  28 caaccaaagtgagttatcatcaaagagagggcaacaagaaccatcaccatcaaccactcaaagagagaaccatc 101  Q
    |||||||||||||||||| ||  |||||| ||| |||||||||||| ||||||||| |||||||||||||||||    
T  15629658 caaccaaagtgagttatcttcgcagagagagcagcaagaaccatcatcatcaaccaatcaaagagagaaccatc 15629731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 2075356 - 2075444
Alignment:
Q  20 gagagcaacaaccaaagtgagttatcatcaaagagagggcaacaagaaccatcaccatcaaccactcaaagagag-aaccatctaaaca 107  Q
    ||||||||||||||||||||||| || |||  ||||| | |||||||||||||||||| |||||  ||||||||| |||||||||||||    
T  2075356 gagagcaacaaccaaagtgagttgtcgtcattgagagtgtaacaagaaccatcaccattaaccatccaaagagagcaaccatctaaaca 2075444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 10354178 - 10354134
Alignment:
Q  19 ggagagcaacaaccaaagtgagttatcatcaaagagagggcaaca 63  Q
    |||||| | ||||||| ||||||||||||||||||||||||||||    
T  10354178 ggagagtagcaaccaacgtgagttatcatcaaagagagggcaaca 10354134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 32290973 - 32290876
Alignment:
Q  18 tggagagcaacaaccaaagtgagttatcatcaaagagagggcaacaagaaccatcaccatcaaccactcaaagagagaaccatctaaacataagaacc 115  Q
    ||||||||| |||| ||||||||||||  ||  |||||| ||| |||||| ||||| ||||||||| ||||||||||||||||| ||||| |||||||    
T  32290973 tggagagcagcaactaaagtgagttattttcgtagagagagcagcaagaatcatcatcatcaaccaatcaaagagagaaccatccaaacaaaagaacc 32290876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 20593701 - 20593778
Alignment:
Q  21 agagcaacaaccaaagtgagttatcatcaaagagaggg--caacaagaaccatcaccatcaaccactcaaagagagaa 96  Q
    |||||| |||||||||||||||||||||| |||||| |  ||  |||||||||||||||||||||  |||||||||||    
T  20593701 agagcagcaaccaaagtgagttatcatcatagagagagaccagtaagaaccatcaccatcaaccagccaaagagagaa 20593778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 38583786 - 38583879
Alignment:
Q  21 agagcaacaaccaaagtgagttatcatcaaagagagggcaacaagaaccatcaccatcaaccactcaaagagagaaccatctaaacataagaac 114  Q
    |||||| |||||||||||||||||| ||| |||||| ||| |||||||||  |||| |||||| || || ||| ||||||| ||||| ||||||    
T  38583786 agagcagcaaccaaagtgagttatcttcacagagagagcagcaagaaccactaccaccaaccaatccaatagaaaaccatccaaacaaaagaac 38583879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 1173120 - 1173178
Alignment:
Q  133 acaaaagaaccgatagagagaaacagccatacaaaagaaccaattgagaggagcaaccaaa 193  Q
    |||||||||| | ||||||||| ||| |||||||||||||||||  |||||||||||||||    
T  1173120 acaaaagaacaggtagagagaagcagtcatacaaaagaaccaat--agaggagcaaccaaa 1173178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 9047948 - 9048025
Alignment:
Q  28 caaccaaagtgagttatcatcaaagagagggcaacaagaaccatcaccatcaaccactcaaagagagaaccatctaaaca 107  Q
    |||||||||||||||||| ||  ||||||  || ||  |||||||||||||||||| ||||| ||||||||||| |||||    
T  9047948 caaccaaagtgagttatcttcgtagagag--cagcataaaccatcaccatcaaccaatcaaaaagagaaccatccaaaca 9048025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 8986708 - 8986666
Alignment:
Q  53 agagggcaacaagaaccatcaccatcaaccactcaaagagaga 95  Q
    |||| ||| |||||||||||||||||||||| |||||||||||    
T  8986708 agagagcagcaagaaccatcaccatcaaccaatcaaagagaga 8986666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 119 - 182
Target Start/End: Complemental strand, 32041708 - 32041645
Alignment:
Q  119 tcaaaccaaaccaaacaaaagaaccgatagagagaaacagccatacaaaagaaccaattgagag 182  Q
    |||||| ||||||||||||||||||| ||||||||| || |||||||||||||| ||| |||||    
T  32041708 tcaaactaaaccaaacaaaagaaccggtagagagaatcaaccatacaaaagaacaaatagagag 32041645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 143
Target Start/End: Original strand, 2098646 - 2098754
Alignment:
Q  34 aagtgagttatcatcaaagagagggcaacaagaaccatcaccatcaaccactcaaagagagaac-catctaaacataagaacccaatcaaaccaaaccaa 132  Q
    |||||||||||| ||| ||||||  || |||||||||||| ||||||    ||||||||||||  |||| ||| | ||||||  ||||||||||||| ||    
T  2098646 aagtgagttatcgtcatagagag--caccaagaaccatcatcatcaatttgtcaaagagagaaatcatccaaagaaaagaactgaatcaaaccaaactaa 2098743  T
Q  133 acaaaagaacc 143  Q
    |||||||||||    
T  2098744 acaaaagaacc 2098754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 16579079 - 16579146
Alignment:
Q  29 aaccaaagtgagttatcatcaaagagagggcaacaagaaccatcaccatcaaccactcaaagagagaa 96  Q
    ||||||||||| ||||||||| | |||| |||||||||| |||| ||||||||||  ||| |||||||    
T  16579079 aaccaaagtgaattatcatcatatagagagcaacaagaatcatcgccatcaaccaggcaaggagagaa 16579146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 16583824 - 16583891
Alignment:
Q  29 aaccaaagtgagttatcatcaaagagagggcaacaagaaccatcaccatcaaccactcaaagagagaa 96  Q
    ||||||||| ||||||||||| | |||| |||||||||| |||| ||||||||||  ||| |||||||    
T  16583824 aaccaaagtaagttatcatcatacagagagcaacaagaatcatcgccatcaaccaggcaaggagagaa 16583891  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 12 - 176
Target Start/End: Original strand, 7259133 - 7259292
Alignment:
Q  12 aacctgtggagagcaacaaccaaagtgagttatcatcaaagagagggcaacaagaaccatcaccatcaaccactcaaagag-agaaccatctaaacataa 110  Q
    ||||| ||||| |||||||||||| |||||||||||| ||||||| ||| |||||      |||||||||||  ||||||| | ||| ||| ||||| ||    
T  7259133 aacctatggagtgcaacaaccaaaatgagttatcatcgaagagagagcagcaaga------accatcaaccagccaaagagaaaaactatccaaacagaa 7259226  T
Q  111 gaacccaatcaa-accaaaccaaacaaaagaaccgatagagagaaacagccatacaaaagaaccaat 176  Q
    |||   | ||||  |||||||| |||||||||||||||| |||||||| ||||||| ||||||||||    
T  7259227 gaataaattcaactccaaaccagacaaaagaaccgatag-gagaaacaaccatacataagaaccaat 7259292  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 95
Target Start/End: Complemental strand, 16871423 - 16871390
Alignment:
Q  62 caagaaccatcaccatcaaccactcaaagagaga 95  Q
    |||||||||||||||||||||| |||||||||||    
T  16871423 caagaaccatcaccatcaaccaatcaaagagaga 16871390  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 9290947 - 9291016
Alignment:
Q  28 caaccaaagtgagttatcatcaaagagagggcaacaagaaccatcaccatcaaccactcaaagagagaac 97  Q
    |||||||||||||||||  ||  ||||||  ||||||||||||||| ||||||||| |||||||||||||    
T  9290947 caaccaaagtgagttatgttcgtagagagatcaacaagaaccatcatcatcaaccaatcaaagagagaac 9291016  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 18984342 - 18984248
Alignment:
Q  21 agagcaacaaccaaagtgagttatcatcaaagagagggcaacaagaaccatcaccatcaaccactcaaagagagaaccatctaaacataagaacc 115  Q
    |||||| ||||||||||||| || | ||  |||||| ||| |||||||||  |||| |||||| ||||| ||||||||||| ||||| |||||||    
T  18984342 agagcagcaaccaaagtgagctaccttcgtagagagagcagcaagaaccactaccaccaaccagtcaaatagagaaccatccaaacaaaagaacc 18984248  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 18984262 - 18984209
Alignment:
Q  129 ccaaacaaaagaaccgatagagagaaacagccatacaaaagaaccaattgagag 182  Q
    |||||||||||||||| |||||| ||  ||||||||| |||||||||| |||||    
T  18984262 ccaaacaaaagaaccggtagagataactagccatacacaagaaccaatagagag 18984209  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 50296088 - 50296009
Alignment:
Q  28 caaccaaagtgagttatcatcaaagagagggcaacaagaaccatcaccatcaaccactcaaagagagaaccatctaaaca 107  Q
    |||||||| | ||||||| ||  |||||| ||| ||| |||||||| ||||||||| ||||||||||||||||| |||||    
T  50296088 caaccaaacttagttatcttcgtagagagagcagcaaaaaccatcatcatcaaccaatcaaagagagaaccatccaaaca 50296009  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 46691751 - 46691827
Alignment:
Q  31 ccaaagtgagttatcatcaaagagagggcaacaagaaccatcaccatcaaccactcaaagagagaaccatctaaaca 107  Q
    ||||||||||||||| |   |||||| ||| ||| |||||||| ||||||||| ||||| ||||||||||| |||||    
T  46691751 ccaaagtgagttatctttgtagagagagcagcaataaccatcaacatcaaccaatcaaatagagaaccatccaaaca 46691827  T

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Target: scaffold0007 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 14549 - 14643
Alignment:
Q  21 agagcaacaaccaaagtgagttatcatcaaagagagggcaacaagaaccatcaccatcaaccactcaaagagagaaccatctaaacataagaacc 115  Q
    |||||| ||||||||||||| || | ||  |||||| ||| |||||||||  |||| |||||| ||||| ||||||||||| ||||| |||||||    
T  14549 agagcagcaaccaaagtgagctaccttcgtagagagagcagcaagaaccactaccaccaaccagtcaaatagagaaccatccaaacaaaagaacc 14643  T

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Target: scaffold0007; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 14629 - 14682
Alignment:
Q  129 ccaaacaaaagaaccgatagagagaaacagccatacaaaagaaccaattgagag 182  Q
    |||||||||||||||| |||||| ||  ||||||||| |||||||||| |||||    
T  14629 ccaaacaaaagaaccggtagagataactagccatacataagaaccaatagagag 14682  T

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