View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16278_high_1 (Length: 375)
Name: NF16278_high_1
Description: NF16278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16278_high_1 |
 | |
|
| [»] chr7 (15 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 15)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 4652506 - 4652132
Alignment:
| Q |
1 |
gatccagaatattatatgctccaaaggctaactctaaaatctgatgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctagaccacctttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4652506 |
gatccagaatattatatgctccaaaggctaactctaaaatctgatgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctagaccacctttgg |
4652407 |
T |
|
| Q |
101 |
ttcgtgatttggataagaatacagcaagtctagtttgtttgtttaaaaaatgctacgatgaaggtgtggcaattgaacaaatagtggatccattcctaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4652406 |
ttcgtgatttggataagaatacagcaagtctagtttgttggtttaaaaaatgctacgatgaaggtgtggcaattgaacaaatagtggatccattcctaag |
4652307 |
T |
|
| Q |
201 |
gggttctatcacagaggagtgcttgaaatattattgcaagttggcgttgagttgtgtgcatgatgatggaactcaacgtccatcaatgagtcaagttgtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4652306 |
gggttctatcacagaggagtgcttgaaatattattgcaagctggcgttgagttgtgtgcatgatgatgggactcaacgtccatcaatgagtcaagttgtt |
4652207 |
T |
|
| Q |
301 |
ataggtttggagtatgcgttgcaaatggaggtgagtgaagaaggtagccaacaattctcgcagtttatgagtgat |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4652206 |
ataggtttggagtatgcgttgcaaatggaggtgagtgaagaaggtagccaacaattctcgcagtttatgagtgat |
4652132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 4665921 - 4665571
Alignment:
| Q |
1 |
gatccagaatattatatgctccaaaggctaactctaaaatctgatgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctagaccacctttgg |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4665921 |
gatcccgaatattatatgctccaaaggctaactctaaaatctgatgtgtactcgttcggtgtggtgcttcttgaggtgttgtgtgctagaccacctttgg |
4665822 |
T |
|
| Q |
101 |
ttcgtgatttggataagaatacagcaagtctagtttgtttgtttaaaaaatgctacgatgaaggtgtggcaattgaacaaatagtggatccattcctaag |
200 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
4665821 |
ttcgtgatttggataagaatactgctagtctagtttgttggtttaaaaaatgttacgatgaaggtgtggcaattgaacaaatagttgatccattcgtaag |
4665722 |
T |
|
| Q |
201 |
gggttctatcacagaggagtgcttgaaatattattgcaagttggcgttgagttgtgtgcatgatgatggaactcaacgtccatcaatgagtcaagttgtt |
300 |
Q |
| |
|
|| |||||||||||| |||| ||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||| || |||||||||||||| ||| |
|
|
| T |
4665721 |
ggattctatcacagatgagtacttgaaatattattgcaagttggcgttaagttgcttgcatgatgatgggactcaacgaccctcaatgagtcaagtggtt |
4665622 |
T |
|
| Q |
301 |
ataggtttggagtatgcgttgcaaatggaggtgagtgaagaaggtagccaa |
351 |
Q |
| |
|
||||| |||| ||| |||||| ||| ||||||||||||| ||||||| |
|
|
| T |
4665621 |
gggggtttagagtttgcattgcaattggtagtgagtgaagaagatagccaa |
4665571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 4629895 - 4629545
Alignment:
| Q |
1 |
gatccagaatattatatgctccaaaggctaactctaaaatctgatgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctagaccacctttgg |
100 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4629895 |
gatcccgaatactatatgctccaaaggctaactctaaaatctgacgtgtactcgtttggtgtggtgcttcttgaggtgttgtgtgctagaccacctttgg |
4629796 |
T |
|
| Q |
101 |
ttcgtgatttggataagaatacagcaagtctagtttgtttgtttaaaaaatgctacgatgaaggtgtggcaattgaacaaatagtggatccattcctaag |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||| |||||||| | ||||||||||||| |||||||||||||| ||||||||| |||| |
|
|
| T |
4629795 |
ttcgtgatttggataagaatacagctagtctagtttgttggtttcaaaaatgccataatgaaggtgtggcgattgaacaaatagtcgatccattcttaag |
4629696 |
T |
|
| Q |
201 |
gggttctatcacagaggagtgcttgaaatattattgcaagttggcgttgagttgtgtgcatgatgatggaactcaacgtccatcaatgagtcaagttgtt |
300 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||| || |||||||||||||| ||| |
|
|
| T |
4629695 |
ggattctatcacagttgagtgcttgaaatattattgcaagttggcgttaagttgcttgcatgatgatgggactcaacgaccctcaatgagtcaagtggtt |
4629596 |
T |
|
| Q |
301 |
ataggtttggagtatgcgttgcaaatggaggtgagtgaagaaggtagccaa |
351 |
Q |
| |
|
||||| |||| ||| |||||| ||| ||||||||||||| ||||||| |
|
|
| T |
4629595 |
gggggtttagagtttgcattgcaattggtagtgagtgaagaagatagccaa |
4629545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 348
Target Start/End: Complemental strand, 4671614 - 4671279
Alignment:
| Q |
13 |
tatatgctccaaaggctaactctaaaatctgatgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctagaccacctttggttcgtgatttgg |
112 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
4671614 |
tatatgttccaaaggctaactctaaaatcagatgtgtactcattcggtgtggtacttcttgaagtgttgtgtgctaggccacctttggttcgcgatttgg |
4671515 |
T |
|
| Q |
113 |
ataagaatacagcaagtctagtttgtttgtttaaaaaatgctacgatgaaggtgtggcaattgaacaaatagtggatccattcctaaggggttctatcac |
212 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||| ||||| |||||||||||| ||||||||| |
|
|
| T |
4671514 |
ataagaatacagctagtctagtttgttggtttaaaagatgctacgatgaaggtgtggcgattgaacaaatactggattcattcctaagggattctatcac |
4671415 |
T |
|
| Q |
213 |
agaggagtgcttgaaatattattgcaagttggcgttgagttgtgtgcatgatgatggaactcaacgtccatcaatgagtcaagttgttataggtttggag |
312 |
Q |
| |
|
| ||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||| ||| ||||| ||| |
|
|
| T |
4671414 |
gggtgagtgtttggaatattattgcaagttggcgttgagttgcttgcatgatgatggaactcaacgaccctcaatgagtcaagtggttgggggtttagag |
4671315 |
T |
|
| Q |
313 |
tatgcgttgcaaatggaggtgagtgaagaaggtagc |
348 |
Q |
| |
|
| || ||||||| ||| ||||||||| |||| |||| |
|
|
| T |
4671314 |
tttgtgttgcaattggtggtgagtgaggaagatagc |
4671279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 8 - 338
Target Start/End: Complemental strand, 4660780 - 4660450
Alignment:
| Q |
8 |
aatattatatgctccaaaggctaactctaaaatctgatgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctagaccacctttggttcgtga |
107 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| || |
|
|
| T |
4660780 |
aatactatatgctccaaaggttaactctaaaatctgaagtgtactcgttcggtgtggtgcttcttgaggtgttgtgtgctaggccaccattggttcgcga |
4660681 |
T |
|
| Q |
108 |
tttggataagaatacagcaagtctagtttgtttgtttaaaaaatgctacgatgaaggtgtggcaattgaacaaatagtggatccattcctaaggggttct |
207 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| |||||||| |||||| |||||||||||||| |||||||||||||||||||||| ||||| | |||| |
|
|
| T |
4660680 |
tttggataagaatacaactagtctagtttgttggtttaaaagatgctatgatgaaggtgtggcgattgaacaaatagtggatccatccctaaaagattct |
4660581 |
T |
|
| Q |
208 |
atcacagaggagtgcttgaaatattattgcaagttggcgttgagttgtgtgcatgatgatggaactcaacgtccatcaatgagtcaagttgttataggtt |
307 |
Q |
| |
|
||||| || ||||| ||| |||||||||||||||||||||| |||||| ||||||||||||| |||||||| || |||||||||||||| ||| |||| |
|
|
| T |
4660580 |
atcacggatgagtgtttggaatattattgcaagttggcgttaagttgtttgcatgatgatgggactcaacgaccttcaatgagtcaagtggttgggggtt |
4660481 |
T |
|
| Q |
308 |
tggagtatgcgttgcaaatggaggtgagtga |
338 |
Q |
| |
|
| |||| || ||||||| ||| ||||||||| |
|
|
| T |
4660480 |
tagagtttgtgttgcaattggtggtgagtga |
4660450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 13 - 343
Target Start/End: Complemental strand, 4642678 - 4642348
Alignment:
| Q |
13 |
tatatgctccaaaggctaactctaaaatctgatgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctagaccacctttggttcgtgatttgg |
112 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
4642678 |
tatatgttccaaaggctaactctaaaatcagatgtgtactcgttcggtgtggtacttcttgaagtgttgtgtgctaggccacctttggttcgtaatttgg |
4642579 |
T |
|
| Q |
113 |
ataagaatacagcaagtctagtttgtttgtttaaaaaatgctacgatgaaggtgtggcaattgaacaaatagtggatccattcctaaggggttctatcac |
212 |
Q |
| |
|
|||||||||| || ||||||||||||| ||| |||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||| | ||| ||||| |
|
|
| T |
4642578 |
ataagaatactgctagtctagtttgttggttcaaaagatgctacgaagaaggtgtggcgattgaacaaatagtggatccattcctaagagattccatcac |
4642479 |
T |
|
| Q |
213 |
agaggagtgcttgaaatattattgcaagttggcgttgagttgtgtgcatgatgatggaactcaacgtccatcaatgagtcaagttgttataggtttggag |
312 |
Q |
| |
|
| ||||| || |||||||||||||||||||||| |||||| ||||||||||||||| |||||| || |||||||||||||| ||| ||||| ||| |
|
|
| T |
4642478 |
gggcgagtgtttagaatattattgcaagttggcgttaagttgtttgcatgatgatggaattcaacgaccctcaatgagtcaagtggttgggggtttagag |
4642379 |
T |
|
| Q |
313 |
tatgcgttgcaaatggaggtgagtgaagaag |
343 |
Q |
| |
|
| |||||||||| ||| ||||||||| |||| |
|
|
| T |
4642378 |
tttgcgttgcaattggtggtgagtgaggaag |
4642348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 13 - 343
Target Start/End: Complemental strand, 4635831 - 4635501
Alignment:
| Q |
13 |
tatatgctccaaaggctaactctaaaatctgatgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctagaccacctttggttcgtgatttgg |
112 |
Q |
| |
|
|||||| |||||||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
4635831 |
tatatgttccaaaggcttactcttaaatcagacgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctaggccacctttggttcgcgatttgg |
4635732 |
T |
|
| Q |
113 |
ataagaatacagcaagtctagtttgtttgtttaaaaaatgctacgatgaaggtgtggcaattgaacaaatagtggatccattcctaaggggttctatcac |
212 |
Q |
| |
|
||||||||||||| ||||||||||||| ||| |||| ||||||||| ||||||||||| ||||||||||| ||||||||||||||||| | ||| ||||| |
|
|
| T |
4635731 |
ataagaatacagctagtctagtttgttggttcaaaagatgctacgaagaaggtgtggcgattgaacaaatggtggatccattcctaagagattccatcac |
4635632 |
T |
|
| Q |
213 |
agaggagtgcttgaaatattattgcaagttggcgttgagttgtgtgcatgatgatggaactcaacgtccatcaatgagtcaagttgttataggtttggag |
312 |
Q |
| |
|
| ||||| || |||||| ||||||||||||||| |||||| ||||||||||||||| |||||| || |||||||||||||| ||| ||||| ||| |
|
|
| T |
4635631 |
gggcgagtgttttgaatatttttgcaagttggcgttaagttgtttgcatgatgatggaattcaacgaccctcaatgagtcaagtggttgggggtttagag |
4635532 |
T |
|
| Q |
313 |
tatgcgttgcaaatggaggtgagtgaagaag |
343 |
Q |
| |
|
| |||||||||| | | ||||||||| |||| |
|
|
| T |
4635531 |
tttgcgttgcaattagtggtgagtgaggaag |
4635501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 4784965 - 4785242
Alignment:
| Q |
1 |
gatccagaatattatatgctccaaaggctaactctaaaatctgatgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctagaccacctttgg |
100 |
Q |
| |
|
||||||||||| || |||| |||||| | |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| ||||| || |||| |
|
|
| T |
4784965 |
gatccagaatactacatgcgacaaaggttgactctaaagtctgatgtgtactctttcggtgttgtgcttcttgaggtgttgtgtgcgagacccccgttgg |
4785064 |
T |
|
| Q |
101 |
ttcgtgatttggataagaatacagcaagtctagtttgtttgtttaaaaaatgctacgatgaaggtgtggcaattgaacaaatagtggatccattcctaag |
200 |
Q |
| |
|
||||| |||||||||||| | ||||||| | | | || |||| ||| ||| ||| |||||||| ||| ||||||| | || ||||| || ||| | | |
|
|
| T |
4785065 |
ttcgttctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaatgaaggtatggtaattgaagatatggtggacccgttcattaa |
4785164 |
T |
|
| Q |
201 |
gggttctatcacagaggagtgcttgaaatattattgcaagttggcgttgagttgtgtgcatgatgatggaactcaacg |
278 |
Q |
| |
|
| |||||| ||| ||||| ||||||| |||||| | ||| ||| | |||| ||||||||||||||| |||||| |
|
|
| T |
4785165 |
agattctataacaagtgagtgtttgaaatgttattgtcaaatggtgttaaattgtttgcatgatgatggaaatcaacg |
4785242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 82 - 275
Target Start/End: Complemental strand, 4676930 - 4676737
Alignment:
| Q |
82 |
tgtgctagaccacctttggttcgtgatttggataagaatacagcaagtctagtttgtttgtttaaaaaatgctacgatgaaggtgtggcaattgaacaaa |
181 |
Q |
| |
|
|||||||| || ||||||||||| ||||| || ||||| || | ||| ||||||||| |||| ||| ||| || | |||| |||||||||| |||||| |
|
|
| T |
4676930 |
tgtgctaggccgcctttggttcgcgatttagacaagaagacgactagtttagtttgttggtttcaaagatgttagggtgaatatgtggcaattaaacaaa |
4676831 |
T |
|
| Q |
182 |
tagtggatccattcctaaggggttctatcacagaggagtgcttgaaatattattgcaagttggcgttgagttgtgtgcatgatgatggaactca |
275 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| ||| |||||||||| | ||| |||||||| | ||||| ||||||| ||||| |
|
|
| T |
4676830 |
tagtggatccattcctaaggaattctatcatagaggagtttttgtaatattattgaactttgatgttgagttatttgcataatgatgggactca |
4676737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 4817394 - 4817671
Alignment:
| Q |
1 |
gatccagaatattatatgctccaaaggctaactctaaaatctgatgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctagaccacctttgg |
100 |
Q |
| |
|
||||||||||| || |||| ||||| | |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| ||||| || |||| |
|
|
| T |
4817394 |
gatccagaatactacatgcgacaaagattgactctaaagtctgatgtgtactctttcggtgttgtgcttcttgaggtgttgtgtgcgagacccccgttgg |
4817493 |
T |
|
| Q |
101 |
ttcgtgatttggataagaatacagcaagtctagtttgtttgtttaaaaaatgctacgatgaaggtgtggcaattgaacaaatagtggatccattcctaag |
200 |
Q |
| |
|
|||| |||||||||||| | ||||||| | | | || |||| ||| ||| ||| |||||||| ||| ||||||| | || ||||| || ||| | | |
|
|
| T |
4817494 |
ttcggtctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaatgaaggtatggtaattgaagatatggtggacccgttcattaa |
4817593 |
T |
|
| Q |
201 |
gggttctatcacagaggagtgcttgaaatattattgcaagttggcgttgagttgtgtgcatgatgatggaactcaacg |
278 |
Q |
| |
|
| |||||| ||| ||||| ||||||| |||||| | ||| ||| | |||| ||||||||||||||| |||||| |
|
|
| T |
4817594 |
agattctataacaagtgagtgtttgaaatgttattgtcaaatggtgttaaattgtttgcatgatgatggaaatcaacg |
4817671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 278
Target Start/End: Original strand, 4713226 - 4713473
Alignment:
| Q |
31 |
actctaaaatctgatgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctagaccacctttggttcgtgatttggataagaatacagcaagtc |
130 |
Q |
| |
|
||||| || ||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||| || | |||||||||| | | || | |
|
|
| T |
4713226 |
actcttaagtctgacgtgtactcattcggagttgtgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttggataaggaaaaagtgaaca |
4713325 |
T |
|
| Q |
131 |
tagtttgtttgtttaaaaaatgctacgatgaaggtgtggcaattgaacaaatagtggatccattcctaaggggttctatcacagaggagtgcttgaaata |
230 |
Q |
| |
|
| ||| |||||| |||||||| ||| ||||||||||| | ||||| | || ||||| || ||| ||| || ||||| ||| ||||| ||||||| |
|
|
| T |
4713326 |
tggttgctttgttcaaaaaatgttacaatgaaggtgtgatagttgaagagatggtggacccgttcataaaggactctataacaagtgagtgtttgaaatg |
4713425 |
T |
|
| Q |
231 |
ttattgcaagttggcgttgagttgtgtgcatgatgatggaactcaacg |
278 |
Q |
| |
|
|||||| | ||| |||||||||| |||||| |||||||| |||||| |
|
|
| T |
4713426 |
ttattgtgaaatggtgttgagttgtttgcatggtgatggaaatcaacg |
4713473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 31 - 278
Target Start/End: Original strand, 4854596 - 4854843
Alignment:
| Q |
31 |
actctaaaatctgatgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctagaccacctttggttcgtgatttggataagaatacagcaagtc |
130 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| || ||||||||| |||||||||| ||||||||||||| || | ||||||||||| | || | |
|
|
| T |
4854596 |
actctaaagtctgatgtgtactctttcggtgatgtacttcttgagatgttgtgtgcgagaccacctttggatcatttattggataagaaaaaagtgaaca |
4854695 |
T |
|
| Q |
131 |
tagtttgtttgtttaaaaaatgctacgatgaaggtgtggcaattgaacaaatagtggatccattcctaaggggttctatcacagaggagtgcttgaaata |
230 |
Q |
| |
|
| ||| |||||| |||||||| ||| ||||||| ||| | ||||| | || ||||| |||||| ||| || ||||| ||| ||||| ||||||| |
|
|
| T |
4854696 |
tggttgctttgttcaaaaaatgttacaatgaaggagtgatagttgaagagatggtggacccattcataaaggactctataacaagtgagtgtttgaaatt |
4854795 |
T |
|
| Q |
231 |
ttattgcaagttggcgttgagttgtgtgcatgatgatggaactcaacg |
278 |
Q |
| |
|
|||||| | ||| |||||||||| |||||| |||||||| |||||| |
|
|
| T |
4854796 |
ttattgtcaaatggtgttgagttgtttgcatggtgatggaaatcaacg |
4854843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 4862854 - 4862771
Alignment:
| Q |
22 |
caaaggctaactctaaaatctgatgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctagaccacctttggttcgt |
105 |
Q |
| |
|
|||||| | ||||||||||| || ||||| || |||||||| || |||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
4862854 |
caaaggttgactctaaaatccgacgtgtattctttcggtgttgtccttcttgaggtgttgtgtgcgagaccaccattggttcgt |
4862771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 168
Target Start/End: Original strand, 4698365 - 4698487
Alignment:
| Q |
46 |
gtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctagaccacctttggttcgtgatttggataagaatacagcaagtctagtttgtttgttta |
145 |
Q |
| |
|
|||||||| || ||||| |||||||||||||| |||||||| |||||||||||||||||| |||||| ||||| | ||| ||| |||| | || ||| |
|
|
| T |
4698365 |
gtgtactcttttggtgttgtgcttcttgaggtattgtgtgcgagaccacctttggttcgttctttggaaaagaaaaaagcgagtttagtcttttggttcc |
4698464 |
T |
|
| Q |
146 |
aaaaatgctacgatgaaggtgtg |
168 |
Q |
| |
|
||| ||| ||| ||||||||||| |
|
|
| T |
4698465 |
aaagatgttacaatgaaggtgtg |
4698487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4676991 - 4676945
Alignment:
| Q |
1 |
gatccagaatattatatgctccaaaggctaactctaaaatctgatgt |
47 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
4676991 |
gatcctgaatattacatgctccaaaggctaactctaaaatcggatgt |
4676945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 13 - 350
Target Start/End: Original strand, 18926881 - 18927218
Alignment:
| Q |
13 |
tatatgctccaaaggctaactctaaaatctgatgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctagaccacctttggttcgtgatttgg |
112 |
Q |
| |
|
||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| |||||||| || |||||||||||||| ||||| | |
|
|
| T |
18926881 |
tatatgctccaaaggcttaccctaaaatctgacgtgtactcattcggtgtggtgcttcttgaggtattgtgtgcaaggccacctttggttcgcgatttag |
18926980 |
T |
|
| Q |
113 |
ataagaatacagcaagtctagtttgtttgtttaaaaaatgctacgatgaaggtgtggcaattgaacaaatagtggatccattcctaaggggttctatcac |
212 |
Q |
| |
|
||||||| || || ||||||||||||| |||| ||| ||| |||||||||||||| ||||| |||| || || ||||||||||| |||| ||||||||| |
|
|
| T |
18926981 |
ataagaagacggctagtctagtttgttggtttcaaagatgttacgatgaaggtgttccaattaaacagatcgtagatccattcctgagggattctatcac |
18927080 |
T |
|
| Q |
213 |
agaggagtgcttgaaatattattgcaagttggcgttgagttgtgtgcatgatgatggaactcaacgtccatcaatgagtcaagttgttataggtttggag |
312 |
Q |
| |
|
| | || || ||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||| || ||||||| |||||| ||| | |||||||| |
|
|
| T |
18927081 |
aaatgaatgtttgaaatattactgcaagttggcgttgagttgtttgcatgatgatgggactcaacgaccctcaatgaatcaagtggttgtgagtttggag |
18927180 |
T |
|
| Q |
313 |
tatgcgttgcaaatggaggtgagtgaagaaggtagcca |
350 |
Q |
| |
|
| || |||||| ||| ||||||||| |||| |||||| |
|
|
| T |
18927181 |
tctgtgttgcagttggtggtgagtgacgaagatagcca |
18927218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University