View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16278_low_2 (Length: 494)

Name: NF16278_low_2
Description: NF16278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16278_low_2
NF16278_low_2
[»] chr1 (8 HSPs)
chr1 (14-278)||(5934013-5934278)
chr1 (360-476)||(5932978-5933094)
chr1 (360-474)||(19253598-19253712)
chr1 (218-278)||(5933934-5933995)
chr1 (290-324)||(5933880-5933914)
chr1 (324-354)||(29836237-29836267)
chr1 (326-354)||(39076266-39076294)
chr1 (326-354)||(40981638-40981666)
[»] chr7 (3 HSPs)
chr7 (360-453)||(18196927-18197020)
chr7 (326-354)||(13761781-13761809)
chr7 (326-354)||(24759474-24759502)
[»] chr3 (2 HSPs)
chr3 (322-354)||(52126881-52126913)
chr3 (325-354)||(29129129-29129158)
[»] chr5 (4 HSPs)
chr5 (298-328)||(26044885-26044915)
chr5 (324-354)||(40946708-40946738)
chr5 (325-354)||(30463749-30463778)
chr5 (326-354)||(4077838-4077866)
[»] scaffold0005 (1 HSPs)
scaffold0005 (325-354)||(230463-230492)
[»] chr4 (14 HSPs)
chr4 (321-354)||(1678493-1678526)
chr4 (325-354)||(14210463-14210492)
chr4 (325-354)||(14211432-14211461)
chr4 (325-354)||(14212383-14212412)
chr4 (325-354)||(14213352-14213381)
chr4 (325-354)||(14214320-14214349)
chr4 (325-354)||(14215289-14215318)
chr4 (325-354)||(14218160-14218189)
chr4 (325-354)||(14219130-14219159)
chr4 (325-354)||(14220099-14220128)
chr4 (325-354)||(14221050-14221079)
chr4 (325-354)||(14222019-14222048)
chr4 (325-354)||(14222988-14223017)
chr4 (325-354)||(14586882-14586911)
[»] chr8 (1 HSPs)
chr8 (326-354)||(38681137-38681165)
[»] chr2 (1 HSPs)
chr2 (326-354)||(26449093-26449121)


Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 14 - 278
Target Start/End: Complemental strand, 5934278 - 5934013
Alignment:
Q  14 tctaactatagggatgtagacaatcattttatcttatatgtactgtgttatttactctctctaagctaggctgggatatggttttggaaatgccaaattt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5934278 tctaactatagggatgtagacaatcattttatcttatatgtactgtgttatttactctctctaagctaggctgggatatggttttggaaatgccaaattt 5934179  T
Q  114 atatactaacaaaaaggagttaagattatgttctccatatcttcttcctttacttgctgttttggtgaagttatatttatttatttcagccgaaagaaca 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5934178 atatactaacaaaaaggagttaagattatgttctccatatcttcttcctttacttgctgttttggtgatgttatatttatttatttcagccgaaagaaca 5934079  T
Q  214 cttatttaatgtaatgtaacgtgga-cctatgtacaaaaacttgtgtggggtcctgccttcactac 278  Q
    |||||||||||||||| |||||||| |||||  |||||||||| ||||||||||||||||||||||    
T  5934078 cttatttaatgtaatgcaacgtggaccctatacacaaaaacttatgtggggtcctgccttcactac 5934013  T

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Target: chr1; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 360 - 476
Target Start/End: Complemental strand, 5933094 - 5932978
Alignment:
Q  360 tggttgatgaaaatggcaacgtatggaactacagtctccagttttcggagactccttatgcaaacttcatgattggtggtggatgggaacgattggtgca 459  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  5933094 tggttgatgaaaatggcaacgtatggaactgcagtctccagttttcggagactccttatgcagacttcaagattggtggtggatgggaacgattggtgca 5932995  T
Q  460 ggctcaaaggattaagg 476  Q
    ||||| |||||||||||    
T  5932994 ggctcgaaggattaagg 5932978  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 360 - 474
Target Start/End: Complemental strand, 19253712 - 19253598
Alignment:
Q  360 tggttgatgaaaatggcaacgtatggaactacagtctccagttttcggagactccttatgcaaacttcatgattggtggtggatgggaacgattggtgca 459  Q
    |||| ||||| |||||||| || ||||||| ||| || | || |||||||||||||||||||||||||| ||| || ||||| ||||||||| |||||||    
T  19253712 tggtggatgagaatggcaatgtctggaactgcagccttctgtattcggagactccttatgcaaacttcaggatagggggtggctgggaacgaatggtgca 19253613  T
Q  460 ggctcaaaggattaa 474  Q
    ||||| |||||||||    
T  19253612 ggctcgaaggattaa 19253598  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 5933995 - 5933934
Alignment:
Q  218 tttaatgtaatgtaacgtggacc-tatgtacaaaaacttgtgtggggtcctgccttcactac 278  Q
    |||||||||||| |||||||||| |||  |||||||||| ||||||||||||||||||||||    
T  5933995 tttaatgtaatgcaacgtggaccctatacacaaaaacttatgtggggtcctgccttcactac 5933934  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 324
Target Start/End: Complemental strand, 5933914 - 5933880
Alignment:
Q  290 cctttctaatcatatcatacttcatacttatttct 324  Q
    |||||||||||||||||||||||||| ||||||||    
T  5933914 cctttctaatcatatcatacttcatatttatttct 5933880  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 354
Target Start/End: Original strand, 29836237 - 29836267
Alignment:
Q  324 taatcctttatatctaatcctagcaaacatg 354  Q
    |||||||||||||||||||||||||||||||    
T  29836237 taatcctttatatctaatcctagcaaacatg 29836267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 354
Target Start/End: Complemental strand, 39076294 - 39076266
Alignment:
Q  326 atcctttatatctaatcctagcaaacatg 354  Q
    |||||||||||||||||||||||||||||    
T  39076294 atcctttatatctaatcctagcaaacatg 39076266  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 354
Target Start/End: Complemental strand, 40981666 - 40981638
Alignment:
Q  326 atcctttatatctaatcctagcaaacatg 354  Q
    |||||||||||||||||||||||||||||    
T  40981666 atcctttatatctaatcctagcaaacatg 40981638  T

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Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 360 - 453
Target Start/End: Original strand, 18196927 - 18197020
Alignment:
Q  360 tggttgatgaaaatggcaacgtatggaactacagtctccagttttcggagactccttatgcaaacttcatgattggtggtggatgggaacgatt 453  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  18196927 tggttgatgaaaatggcaacgtatggaactgcagtctccagttttcggagactccttatgcaaacttcaggattggtggtggataggaacgatt 18197020  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 354
Target Start/End: Original strand, 13761781 - 13761809
Alignment:
Q  326 atcctttatatctaatcctagcaaacatg 354  Q
    |||||||||||||||||||||||||||||    
T  13761781 atcctttatatctaatcctagcaaacatg 13761809  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 354
Target Start/End: Original strand, 24759474 - 24759502
Alignment:
Q  326 atcctttatatctaatcctagcaaacatg 354  Q
    |||||||||||||||||||||||||||||    
T  24759474 atcctttatatctaatcctagcaaacatg 24759502  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 354
Target Start/End: Original strand, 52126881 - 52126913
Alignment:
Q  322 tctaatcctttatatctaatcctagcaaacatg 354  Q
    |||||||||||||||||||||||||||||||||    
T  52126881 tctaatcctttatatctaatcctagcaaacatg 52126913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 354
Target Start/End: Original strand, 29129129 - 29129158
Alignment:
Q  325 aatcctttatatctaatcctagcaaacatg 354  Q
    ||||||||||||||||||||||||||||||    
T  29129129 aatcctttatatctaatcctagcaaacatg 29129158  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 328
Target Start/End: Complemental strand, 26044915 - 26044885
Alignment:
Q  298 atcatatcatacttcatacttatttctaatc 328  Q
    |||||||||||||||||||||||||||||||    
T  26044915 atcatatcatacttcatacttatttctaatc 26044885  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 354
Target Start/End: Original strand, 40946708 - 40946738
Alignment:
Q  324 taatcctttatatctaatcctagcaaacatg 354  Q
    |||||||||||||||||||||||||||||||    
T  40946708 taatcctttatatctaatcctagcaaacatg 40946738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 354
Target Start/End: Original strand, 30463749 - 30463778
Alignment:
Q  325 aatcctttatatctaatcctagcaaacatg 354  Q
    ||||||||||||||||||||||||||||||    
T  30463749 aatcctttatatctaatcctagcaaacatg 30463778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 354
Target Start/End: Original strand, 4077838 - 4077866
Alignment:
Q  326 atcctttatatctaatcctagcaaacatg 354  Q
    |||||||||||||||||||||||||||||    
T  4077838 atcctttatatctaatcctagcaaacatg 4077866  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 354
Target Start/End: Original strand, 230463 - 230492
Alignment:
Q  325 aatcctttatatctaatcctagcaaacatg 354  Q
    ||||||||||||||||||||||||||||||    
T  230463 aatcctttatatctaatcctagcaaacatg 230492  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 354
Target Start/End: Complemental strand, 1678526 - 1678493
Alignment:
Q  321 ttctaatcctttatatctaatcctagcaaacatg 354  Q
    |||| |||||||||||||||||||||||||||||    
T  1678526 ttctgatcctttatatctaatcctagcaaacatg 1678493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 14210492 - 14210463
Alignment:
Q  325 aatcctttatatctaatcctagcaaacatg 354  Q
    ||||||||||||||||||||||||||||||    
T  14210492 aatcctttatatctaatcctagcaaacatg 14210463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 14211461 - 14211432
Alignment:
Q  325 aatcctttatatctaatcctagcaaacatg 354  Q
    ||||||||||||||||||||||||||||||    
T  14211461 aatcctttatatctaatcctagcaaacatg 14211432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 14212412 - 14212383
Alignment:
Q  325 aatcctttatatctaatcctagcaaacatg 354  Q
    ||||||||||||||||||||||||||||||    
T  14212412 aatcctttatatctaatcctagcaaacatg 14212383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 14213381 - 14213352
Alignment:
Q  325 aatcctttatatctaatcctagcaaacatg 354  Q
    ||||||||||||||||||||||||||||||    
T  14213381 aatcctttatatctaatcctagcaaacatg 14213352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 14214349 - 14214320
Alignment:
Q  325 aatcctttatatctaatcctagcaaacatg 354  Q
    ||||||||||||||||||||||||||||||    
T  14214349 aatcctttatatctaatcctagcaaacatg 14214320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 14215318 - 14215289
Alignment:
Q  325 aatcctttatatctaatcctagcaaacatg 354  Q
    ||||||||||||||||||||||||||||||    
T  14215318 aatcctttatatctaatcctagcaaacatg 14215289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 14218189 - 14218160
Alignment:
Q  325 aatcctttatatctaatcctagcaaacatg 354  Q
    ||||||||||||||||||||||||||||||    
T  14218189 aatcctttatatctaatcctagcaaacatg 14218160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 14219159 - 14219130
Alignment:
Q  325 aatcctttatatctaatcctagcaaacatg 354  Q
    ||||||||||||||||||||||||||||||    
T  14219159 aatcctttatatctaatcctagcaaacatg 14219130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 14220128 - 14220099
Alignment:
Q  325 aatcctttatatctaatcctagcaaacatg 354  Q
    ||||||||||||||||||||||||||||||    
T  14220128 aatcctttatatctaatcctagcaaacatg 14220099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 14221079 - 14221050
Alignment:
Q  325 aatcctttatatctaatcctagcaaacatg 354  Q
    ||||||||||||||||||||||||||||||    
T  14221079 aatcctttatatctaatcctagcaaacatg 14221050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 14222048 - 14222019
Alignment:
Q  325 aatcctttatatctaatcctagcaaacatg 354  Q
    ||||||||||||||||||||||||||||||    
T  14222048 aatcctttatatctaatcctagcaaacatg 14222019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 14223017 - 14222988
Alignment:
Q  325 aatcctttatatctaatcctagcaaacatg 354  Q
    ||||||||||||||||||||||||||||||    
T  14223017 aatcctttatatctaatcctagcaaacatg 14222988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 14586911 - 14586882
Alignment:
Q  325 aatcctttatatctaatcctagcaaacatg 354  Q
    ||||||||||||||||||||||||||||||    
T  14586911 aatcctttatatctaatcctagcaaacatg 14586882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 354
Target Start/End: Original strand, 38681137 - 38681165
Alignment:
Q  326 atcctttatatctaatcctagcaaacatg 354  Q
    |||||||||||||||||||||||||||||    
T  38681137 atcctttatatctaatcctagcaaacatg 38681165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 354
Target Start/End: Original strand, 26449093 - 26449121
Alignment:
Q  326 atcctttatatctaatcctagcaaacatg 354  Q
    |||||||||||||||||||||||||||||    
T  26449093 atcctttatatctaatcctagcaaacatg 26449121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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