View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16278_low_4 (Length: 336)
Name: NF16278_low_4
Description: NF16278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16278_low_4 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 336
Target Start/End: Complemental strand, 31688632 - 31688313
Alignment:
| Q |
16 |
aagctgaagcttggctagaagctcagaaggaaatgacttttgcgcggaccggagaccatgctaaagtcgctgaactcgaggaagatctgaaggagatgat |
115 |
Q |
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| T |
31688632 |
aagctgaagcttggctagaagctcagaaggaaatgacttttgcgcggaccggagaccatgctaaagtcgctgaactcgaggaagatctgaaggag-tgat |
31688534 |
T |
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| Q |
116 |
aaggtggagtgatcttatagaagaaggacgaagaaaacgaatgaggaaagagctacggaaaaagaggcttgtctcttttgtgtctgatatgtgaaacact |
215 |
Q |
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| T |
31688533 |
aaggtggagcgatcttatagaagaaggacgaaaaaaacgaatgaggaaagacctacagaaaaagaggcttgtctcttttgtgtctgatatgtgaaacact |
31688434 |
T |
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| Q |
216 |
cttgtttcttgnnnnnnnnnnnnattatggctcctgttctatagtatttgatataactatgcagttaactgtttgttaactatggtaacactataacaac |
315 |
Q |
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| T |
31688433 |
cttgtttcttgtttttcttttttattatggctcctgttctatagtatttgatataactatgcagttaactgtttgttaactatggtaacactataacaac |
31688334 |
T |
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| Q |
316 |
ttttctttattggagcttctc |
336 |
Q |
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| T |
31688333 |
ttttctttattggagcttctc |
31688313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 31691675 - 31691564
Alignment:
| Q |
20 |
tgaagcttggctagaagctcagaaggaaatgacttttgcgcggaccggagaccatgctaaagtcgctgaactcgaggaagatctgaaggagatgataagg |
119 |
Q |
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| T |
31691675 |
tgaagcttggctagaagctgagaaggaaatgacttttgctataaccggagactatgctgaagatgctgaactcgagaaagatctgaaggagatgataagg |
31691576 |
T |
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| Q |
120 |
tggagtgatctt |
131 |
Q |
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| T |
31691575 |
tggggcgatctt |
31691564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 239 - 321
Target Start/End: Complemental strand, 27649953 - 27649873
Alignment:
| Q |
239 |
attatggctcctgttctatagtatttgatataactatgcagttaactgtttgttaactatggtaacactataacaacttttct |
321 |
Q |
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| T |
27649953 |
attatggctactgttcta--gtatttgatataactaagcagttaactgtttgttgattatggttacactataagaaattttct |
27649873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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