View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16278_low_6 (Length: 237)
Name: NF16278_low_6
Description: NF16278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16278_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 35491201 - 35490981
Alignment:
| Q |
1 |
ctatcgatgcaatccaaagttttccatctttctcttccacttcactaatgttcttcatggtcttcctttcgaaatcttctaaggtttctaatatttctcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35491201 |
ctatcgatgcaatccaaagttttccatctttctcttccacttcactaatgttcttcatggtcttcctttcgaaatcttctaaggtttctaatatttctcc |
35491102 |
T |
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| Q |
101 |
ttcatcactcagctttacagctgatgaatacaaagcaacccaaaactgaccatatgaatttctccttatattgtcgggaaaacctggaagatcaacaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35491101 |
ttcatcactcagctttacagctgatgaatacaaagcaacccaaaactgaccatatgaatttctccttatattgtcgggaaaacctggaagatcaacaaaa |
35491002 |
T |
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| Q |
201 |
gtactgactttaccagctttt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
35491001 |
gtactgactttaccagctttt |
35490981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 35497419 - 35497344
Alignment:
| Q |
1 |
ctatcgatgcaatccaaagttttccatctttctcttccacttcactaatgttcttcatggtcttcctttcgaaatc |
76 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35497419 |
ctatcgatgcaatccaaagttttccatctttctcttccacttcactaatgttcttcatggtcttcctttcgaaatc |
35497344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 35504145 - 35504028
Alignment:
| Q |
6 |
gatgcaatccaaagttttccatctttctcttccacttcactaatgttcttcatggtcttcctttcgaaatcttctaaggtttctaatatttctccttcat |
105 |
Q |
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| T |
35504145 |
gatgccatccaaagttttccatctttctcttcaatttcactgatgaacttcaaggtcttcccttcacaatcttccaggacttctaatatttccccttcat |
35504046 |
T |
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| Q |
106 |
cactcagctttacagctg |
123 |
Q |
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|||||||||||| ||||| |
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| T |
35504045 |
cactcagctttatagctg |
35504028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 35512771 - 35512660
Alignment:
| Q |
12 |
atccaaagttttccatctttctcttccacttcactaatgttcttcatggtcttcctttcgaaatcttctaaggtttctaatatttctccttcatcactca |
111 |
Q |
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||||||||||||||||||||||||||||||||||| ||| ||||| |||||||| ||| |||||| | |||||| |||||| ||||||||||||| |
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| T |
35512771 |
atccaaagttttccatctttctcttccacttcactgatgaacttcaaggtcttcccttcacgatcttccagactttctattatttccccttcatcactca |
35512672 |
T |
|
| Q |
112 |
gctttacagctg |
123 |
Q |
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|||||| ||||| |
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| T |
35512671 |
gctttatagctg |
35512660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 35512543 - 35512466
Alignment:
| Q |
126 |
gaatacaaagcaacccaaaactgaccatatgaatttctccttatattgtcgggaaaacctggaagatcaacaaaagta |
203 |
Q |
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|||| ||||||||||||||| || || | ||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
35512543 |
gaatgcaaagcaacccaaaagtgcccttctgaatttctccttatattgtcgggaaaacctggaagaacagcaaaagta |
35512466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 203
Target Start/End: Complemental strand, 35503906 - 35503834
Alignment:
| Q |
131 |
caaagcaacccaaaactgaccatatgaatttctccttatattgtcgggaaaacctggaagatcaacaaaagta |
203 |
Q |
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||||||||||||||| || || | |||||||||||||| |||||| ||||| ||||||||| || |||||||| |
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| T |
35503906 |
caaagcaacccaaaattgcccttctgaatttctccttacattgtctggaaagcctggaagaacagcaaaagta |
35503834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 217
Target Start/End: Complemental strand, 40161624 - 40161492
Alignment:
| Q |
85 |
tttctaatatttctccttcatcactcagctttacagctgatgaatacaaagcaacccaaaactgaccatatgaatttctccttatattgtcgggaaaacc |
184 |
Q |
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||||||||||||| ||||||||||||| ||||| ||||| || |||||||||||||||||| |||| ||||||||||||||||||||| ||| |||| |
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| T |
40161624 |
tttctaatatttccccttcatcactcaactttatagctgcattatgcaaagcaacccaaaactgcccatctgaatttctccttatattgtccggataacc |
40161525 |
T |
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| Q |
185 |
tggaagatcaacaaaagtactgactttaccagc |
217 |
Q |
| |
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||||||| | |||||||| |||||| |||||| |
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| T |
40161524 |
tggaagaacggcaaaagtattgacttgaccagc |
40161492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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