View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16278_low_7 (Length: 220)
Name: NF16278_low_7
Description: NF16278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16278_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 4652142 - 4651944
Alignment:
| Q |
1 |
ttatgagtgatcaagagtgtgaccaacatttcgaaagatcccacacctacaaggagaacacagcctcagcaagggcaagtactcaagaacattttttctc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4652142 |
ttatgagtgatcaagagtgtgaccaacatttcgaaagatcccacacctacaaggagagcacagcctcagcgagggcaagtactcaagaacattttttctc |
4652043 |
T |
|
| Q |
101 |
gaatattgtgaatccaagaccacgatcatattcatgtcaaaacctcaaagtttacatttagcaattaatatggaacaacactttatatatgtatagcgt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4652042 |
gaatattgtgaatccaagaccacgatcatattcatgtcaaaacctcaaagtttacatttagcaattaatatggaacaacactttatatatgtatagcgt |
4651944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 27 - 199
Target Start/End: Complemental strand, 4671203 - 4671031
Alignment:
| Q |
27 |
catttcgaaagatcccacacctacaaggagaacacagcctcagcaagggcaagtactcaagaacattttttctcgaatattgtgaatccaagaccacgat |
126 |
Q |
| |
|
||||||| |||||||| |||||| ||||||| |||| |||||| ||| |||||||||||||||||| ||| || | |||| ||||| |||| |||||| |
|
|
| T |
4671203 |
catttcgcaagatcccgcacctataaggagagcacaatctcagcgaggccaagtactcaagaacattctttttctgagattgggaatcaaagaacacgat |
4671104 |
T |
|
| Q |
127 |
catattcatgtcaaaacctcaaagtttacatttagcaattaatatggaacaacactttatatatgtatagcgt |
199 |
Q |
| |
|
| |||||||||||||| |||||||| ||||||||| |||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
4671103 |
cgtattcatgtcaaaatttcaaagttaacatttagcgattaatatcgaacaccactttatatatgtatagcgt |
4671031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 27 - 199
Target Start/End: Complemental strand, 4642258 - 4642086
Alignment:
| Q |
27 |
catttcgaaagatcccacacctacaaggagaacacagcctcagcaagggcaagtactcaagaacattttttctcgaatattgtgaatccaagaccacgat |
126 |
Q |
| |
|
||||||| ||||||||| || | ||||||| |||| |||||| ||| ||| ||| |||||||| ||||||| | ||| ||||| || | ||||| |
|
|
| T |
4642258 |
catttcgcaagatcccagacttttaaggagagcacaatctcagcgaggtcaattacaaaagaacatcttttctctgagattaggaatcaaaaaagacgat |
4642159 |
T |
|
| Q |
127 |
catattcatgtcaaaacctcaaagtttacatttagcaattaatatggaacaacactttatatatgtatagcgt |
199 |
Q |
| |
|
| ||||||||||||||| |||||||||| |||||||| ||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
4642158 |
cgtattcatgtcaaaacttcaaagtttatatttagcagttaatatggaacaccaccttatatatgtatagcgt |
4642086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 177
Target Start/End: Complemental strand, 4676583 - 4676433
Alignment:
| Q |
27 |
catttcgaaagatcccacacctacaaggagaacacagcctcagcaagggcaagtactcaagaacattttttctcgaatattgtgaatccaagaccacgat |
126 |
Q |
| |
|
||||||| ||||||||||||||| ||||||| ||||| ||| ||||||||||| |||| |||| |||||| | | || ||| |||||| | || |
|
|
| T |
4676583 |
catttcgcaagatcccacacctataaggagagcacagtctctacaagggcaagtcctcatgaactccctttctctgagaatggttatcaaagaccgcaat |
4676484 |
T |
|
| Q |
127 |
catattcatgtcaaaacctcaaagtttacatttagcaattaatatggaaca |
177 |
Q |
| |
|
||| ||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4676483 |
catgttcatatcaaaacctcaaagtttatatttagcaattaatatggaaca |
4676433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 199
Target Start/End: Complemental strand, 4635317 - 4635240
Alignment:
| Q |
121 |
cacgatcatattcatgtcaaaacctcaaagtttacatttagcaattaatatggaacaacactttatatatgtatagcgt |
199 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||| ||||||| |||| || ||||| ||| ||||||||||||||||| |
|
|
| T |
4635317 |
cacgatcgtattcatgtcaaaacttcaaagtttatatttagcggttaacatagaacaccac-ttatatatgtatagcgt |
4635240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 4660373 - 4660318
Alignment:
| Q |
36 |
agatcccacacctacaaggagaacacagcctcagcaagggcaagtactcaagaaca |
91 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||| ||| |||||||||||||||| |
|
|
| T |
4660373 |
agatcccacacctacaaggagagtacaatctcagcgaggccaagtactcaagaaca |
4660318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 163
Target Start/End: Complemental strand, 4665507 - 4665380
Alignment:
| Q |
36 |
agatcccacacctacaaggagaacacagcctcagcaagggcaagtactcaagaacattttttctcgaatattgtgaatccaagaccacgatcatattcat |
135 |
Q |
| |
|
||||| |||||||||||||||| ||||| |||||| ||| | |||||| |||||| |||||| |||| ||||| |||| |||| || ||||||| |
|
|
| T |
4665507 |
agatcgcacacctacaaggagagcacagtctcagcgaggctaggtactcgagaacagcctttctctgggattgggaatcaaagaacacggtcgtattcat |
4665408 |
T |
|
| Q |
136 |
gtcaaaacctcaaagtttacatttagca |
163 |
Q |
| |
|
| |||||| ||||| |||| |||||||| |
|
|
| T |
4665407 |
gccaaaacttcaaaatttatatttagca |
4665380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 162
Target Start/End: Complemental strand, 4629481 - 4629355
Alignment:
| Q |
36 |
agatcccacacctacaaggagaacacagcctcagcaagggcaagtactcaagaacattttttctcgaatattgtgaatccaagaccacgatcatattcat |
135 |
Q |
| |
|
||||| |||||||||||||||| ||||| |||||| ||| | |||||| |||||| |||||| |||| ||||| |||| |||| || ||||||| |
|
|
| T |
4629481 |
agatcgcacacctacaaggagagcacagtctcagcgaggctaggtactcgagaacagcctttctctgggattgggaatcaaagaacacggtcgtattcat |
4629382 |
T |
|
| Q |
136 |
gtcaaaacctcaaagtttacatttagc |
162 |
Q |
| |
|
| |||||| ||||| |||| ||||||| |
|
|
| T |
4629381 |
gccaaaacttcaaaatttatatttagc |
4629355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 36 - 183
Target Start/End: Original strand, 18927310 - 18927457
Alignment:
| Q |
36 |
agatcccacacctacaaggagaacacagcctcagcaagggcaagtactcaagaacattttttctcgaatattgtgaatccaagaccacgatcatattcat |
135 |
Q |
| |
|
||||||||||||| ||||||| || | ||| || |||||||||||||| ||||| |||||| | |||| |||| |||||||||||| ||||||| |
|
|
| T |
18927310 |
agatcccacaccttgaaggagagcaatgtctcggcgagggcaagtactcatgaacaccctttctctgaaattggtaatcaaagaccacgatcgtattcat |
18927409 |
T |
|
| Q |
136 |
gtcaaaacctcaaagtttacatttagcaattaatatggaacaacactt |
183 |
Q |
| |
|
|||||||||| | |||||| |||||||||||||||||||||| ||||| |
|
|
| T |
18927410 |
gtcaaaaccttagagtttatatttagcaattaatatggaacaccactt |
18927457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University