View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16279_high_2 (Length: 339)

Name: NF16279_high_2
Description: NF16279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16279_high_2
NF16279_high_2
[»] chr3 (15 HSPs)
chr3 (159-332)||(52952519-52952691)
chr3 (1-56)||(52952362-52952417)
chr3 (1-56)||(31672571-31672626)
chr3 (1-56)||(31905083-31905138)
chr3 (1-56)||(31923011-31923066)
chr3 (168-271)||(40272824-40272927)
chr3 (172-242)||(29106595-29106665)
chr3 (168-232)||(31904908-31904972)
chr3 (168-232)||(45948889-45948953)
chr3 (168-270)||(7943032-7943134)
chr3 (168-224)||(21875055-21875112)
chr3 (169-214)||(54374415-54374460)
chr3 (199-271)||(6411834-6411906)
chr3 (168-232)||(54032610-54032674)
chr3 (168-271)||(54484732-54484836)
[»] chr7 (8 HSPs)
chr7 (168-273)||(33871920-33872024)
chr7 (168-232)||(11617639-11617703)
chr7 (168-232)||(19426940-19427004)
chr7 (168-232)||(23419725-23419789)
chr7 (168-232)||(7879658-7879722)
chr7 (168-218)||(46354214-46354264)
chr7 (168-232)||(14099057-14099121)
chr7 (168-232)||(14409074-14409138)
[»] chr2 (6 HSPs)
chr2 (168-273)||(19977724-19977829)
chr2 (170-273)||(32781299-32781401)
chr2 (188-271)||(26684632-26684715)
chr2 (168-271)||(11514456-11514558)
chr2 (168-232)||(5450305-5450370)
chr2 (168-232)||(8455367-8455431)
[»] scaffold0057 (2 HSPs)
scaffold0057 (166-271)||(46849-46954)
scaffold0057 (173-269)||(24786-24882)
[»] chr4 (13 HSPs)
chr4 (168-271)||(19027868-19027971)
chr4 (168-232)||(9987885-9987949)
chr4 (168-218)||(10660424-10660474)
chr4 (168-218)||(10874569-10874619)
chr4 (168-218)||(16408668-16408718)
chr4 (172-229)||(10379997-10380053)
chr4 (171-232)||(14983857-14983918)
chr4 (172-229)||(51865092-51865149)
chr4 (168-232)||(17043445-17043509)
chr4 (168-271)||(20639670-20639774)
chr4 (168-232)||(25629069-25629133)
chr4 (168-232)||(41018845-41018908)
chr4 (168-232)||(47443977-47444041)
[»] chr5 (5 HSPs)
chr5 (168-218)||(22187305-22187355)
chr5 (168-232)||(1405207-1405271)
chr5 (168-232)||(24448910-24448974)
chr5 (168-218)||(12006395-12006445)
chr5 (166-218)||(29334413-29334465)
[»] chr1 (9 HSPs)
chr1 (169-269)||(43207539-43207640)
chr1 (172-232)||(10163806-10163866)
chr1 (169-232)||(46248004-46248067)
chr1 (169-269)||(23768334-23768434)
chr1 (168-273)||(32632567-32632671)
chr1 (168-236)||(25468310-25468378)
chr1 (168-232)||(31382265-31382328)
chr1 (168-232)||(44485160-44485224)
chr1 (168-232)||(46991847-46991911)
[»] chr8 (11 HSPs)
chr8 (169-232)||(44530170-44530233)
chr8 (168-232)||(8897815-8897879)
chr8 (168-232)||(36720816-36720880)
chr8 (168-232)||(12625909-12625974)
chr8 (168-269)||(28817640-28817741)
chr8 (168-273)||(29877114-29877219)
chr8 (168-269)||(36918144-36918245)
chr8 (168-232)||(5135340-5135404)
chr8 (168-232)||(8483989-8484053)
chr8 (178-218)||(16225049-16225089)
chr8 (168-228)||(17823596-17823656)
[»] chr6 (6 HSPs)
chr6 (169-232)||(20400688-20400751)
chr6 (169-228)||(32728211-32728270)
chr6 (168-232)||(3815128-3815192)
chr6 (171-218)||(6024256-6024303)
chr6 (185-222)||(24751135-24751172)
chr6 (172-232)||(1941879-1941939)
[»] scaffold0049 (1 HSPs)
scaffold0049 (168-269)||(58997-59100)
[»] scaffold0187 (2 HSPs)
scaffold0187 (199-232)||(10101-10134)
scaffold0187 (199-232)||(20429-20462)
[»] scaffold0194 (1 HSPs)
scaffold0194 (199-271)||(24699-24771)


Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 159 - 332
Target Start/End: Original strand, 52952519 - 52952691
Alignment:
Q  159 gtaccactgctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgaga 258  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||| | | |||||||||    
T  52952519 gtaccacggttggaaacaacctcttatgtaaaaaatatgataagactgtgtacaatacaccaaatagtgggacctcttttcaaactctttatatacgaga 52952618  T
Q  259 gctttagtgcaccagttacccctgatatttaaaattgtactactattacaatagtaattcaaagtctattcaac 332  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52952619 gctttagtgcaccggtta-ccctgatatttaaaattgtactactattacaatagtaattcaaagtctattcaac 52952691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 52952362 - 52952417
Alignment:
Q  1 cattaaaattacatattagtcaaagtttttaaaatggaggccaaaattgtgcaatt 56  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  52952362 cattaaaatcacatattagtcaaagtttttaaaatggaggccaaaattgtgcaatt 52952417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 31672571 - 31672626
Alignment:
Q  1 cattaaaattacatattagtcaaagtttttaaaatggaggccaaaattgtgcaatt 56  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  31672571 cattaaaatcacatattagtcaaagtttttaaaatagaggccaaaattgtgcaatt 31672626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 31905138 - 31905083
Alignment:
Q  1 cattaaaattacatattagtcaaagtttttaaaatggaggccaaaattgtgcaatt 56  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  31905138 cattaaaatcacatattagtcaaagtttttaaaatagaggccaaaattgtgcaatt 31905083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 31923066 - 31923011
Alignment:
Q  1 cattaaaattacatattagtcaaagtttttaaaatggaggccaaaattgtgcaatt 56  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  31923066 cattaaaatcacatattagtcaaagtttttaaaatagaggccaaaattgtgcaatt 31923011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 271
Target Start/End: Complemental strand, 40272927 - 40272824
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtg 267  Q
    |||||||||||||||| ||||||||| | | |||| ||||||||||||||| |||| |||||||| ||| ||  ||  || |||| || |||||||||||    
T  40272927 ctggaaacaacctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtg 40272828  T
Q  268 cacc 271  Q
    ||||    
T  40272827 cacc 40272824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 29106595 - 29106665
Alignment:
Q  172 aaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaa 242  Q
    |||||||||||| ||||||||||| ||||||  | |||||||||||| |||| |||||| | |||||||||    
T  29106595 aaacaacctcttgtgtaaaaaataggataaggttacgtacaatacaccaaattgtgggatccctttccaaa 29106665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 31904972 - 31904908
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    ||||||||| ||| |||||||||||| | | || ||||||||||||||||| |||| ||||||||    
T  31904972 ctggaaacagcctattatgtaaaaaacagggtatgactgcgtacaatacaccaaatggtgggacc 31904908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 45948953 - 45948889
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    |||||||||||||||| ||||||||||| | |||| |||| |||||||||| || | ||||||||    
T  45948953 ctggaaacaacctcttgtgtaaaaaatagggtaaggctgcatacaatacaccaattggtgggacc 45948889  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 270
Target Start/End: Original strand, 7943032 - 7943134
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtg 267  Q
    ||||||||| | |||| | ||||||| | | |||||||||||||||||||  |||| |||||| | ||||||| ||  || |||| || |||||||||||    
T  7943032 ctggaaacagcatcttgtctaaaaaacagggtaagactgcgtacaatacatcaaatggtgggatccctttccagaccatgcgtatgcgggagctttagtg 7943131  T
Q  268 cac 270  Q
    |||    
T  7943132 cac 7943134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 21875055 - 21875112
Alignment:
Q  168 ctggaaacaacctcttatgt-aaaaaatatgataagactgcgtacaatacactaaata 224  Q
    |||||||||||||||| ||| |||||| | | |||| |||||||||||||||||||||    
T  21875055 ctggaaacaacctcttgtgttaaaaaagagggtaaggctgcgtacaatacactaaata 21875112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 54374460 - 54374415
Alignment:
Q  169 tggaaacaacctcttatgtaaaaaatatgataagactgcgtacaat 214  Q
    ||||||||||||||| ||||||||||| | |||| |||||||||||    
T  54374460 tggaaacaacctcttgtgtaaaaaatagggtaaggctgcgtacaat 54374415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 271
Target Start/End: Complemental strand, 6411906 - 6411834
Alignment:
Q  199 taagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtgcacc 271  Q
    |||| ||||||||||||||| ||||  ||||||| ||| ||| || ||| |||| || |||||||||||||||    
T  6411906 taaggctgcgtacaatacaccaaatgatgggaccccttcccagaccttgcgtatgcgggagctttagtgcacc 6411834  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 54032674 - 54032610
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    |||||||||||||||| ||||||||| | | |||| |||| ||||||||||  ||| ||||||||    
T  54032674 ctggaaacaacctcttgtgtaaaaaacagggtaaggctgcatacaatacaccgaatggtgggacc 54032610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 271
Target Start/End: Original strand, 54484732 - 54484836
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaat-atgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagt 266  Q
    ||||||||| |||||| |||||||||  | | |||| ||||||||||||||| |||| |||||||| ||| ||  ||  || |||| || ||||||||||    
T  54484732 ctggaaacagcctcttgtgtaaaaaaacaaggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagt 54484831  T
Q  267 gcacc 271  Q
    |||||    
T  54484832 gcacc 54484836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 273
Target Start/End: Complemental strand, 33872024 - 33871920
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtg 267  Q
    |||||||||||||||| ||||||||  | |||||| ||||||||||||||| |||| |||||||| ||| ||| ||  ||||||| ||||||||||||||    
T  33872024 ctggaaacaacctcttgtgtaaaaac-aggataaggctgcgtacaatacaccaaatggtgggaccccttcccagaccctgtgtatgcgagagctttagtg 33871926  T
Q  268 caccag 273  Q
    ||||||    
T  33871925 caccag 33871920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 11617703 - 11617639
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    |||||||||||||||| ||||||||| | | |||||||||||||||||||| |||| ||||||||    
T  11617703 ctggaaacaacctcttgtgtaaaaaacagggtaagactgcgtacaatacaccaaatggtgggacc 11617639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 19427004 - 19426940
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    ||||||||| |||||| ||||||||||| | |||||||||||||||||||| |||| ||||||||    
T  19427004 ctggaaacagcctcttgtgtaaaaaatagggtaagactgcgtacaatacaccaaatggtgggacc 19426940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 23419789 - 23419725
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    ||||||||| |||||| ||||||||| | | |||||||||||||||||||| |||| ||||||||    
T  23419789 ctggaaacagcctcttgtgtaaaaaacagggtaagactgcgtacaatacaccaaatggtgggacc 23419725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 7879658 - 7879722
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    |||||||||| ||||| ||||||||| | | |||| ||||||||||||||| |||| ||||||||    
T  7879658 ctggaaacaatctcttgtgtaaaaaacaaggtaaggctgcgtacaatacaccaaatggtgggacc 7879722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 46354214 - 46354264
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacac 218  Q
    |||||||||||||||| ||||||||| | | |||| |||||||||||||||    
T  46354214 ctggaaacaacctcttgtgtaaaaaacagggtaaggctgcgtacaatacac 46354264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 14099121 - 14099057
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    ||||||| | ||| || ||||||||| | | |||||||||||||||||||| |||| ||||||||    
T  14099121 ctggaaatagccttttgtgtaaaaaacaggttaagactgcgtacaatacaccaaatggtgggacc 14099057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 14409138 - 14409074
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    ||||||| | ||| || ||||||||| | | |||||||||||||||||||| |||| ||||||||    
T  14409138 ctggaaatagccttttgtgtaaaaaacaggttaagactgcgtacaatacaccaaatggtgggacc 14409074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 273
Target Start/End: Complemental strand, 19977829 - 19977724
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtg 267  Q
    ||||||||| |||||| ||||||||||| ||||||  |||||||||||||| |||| |||||| | ||| || ||| |||||||| || |||||||||||    
T  19977829 ctggaaacagcctcttttgtaaaaaataggataaggttgcgtacaatacaccaaatggtgggatcccttcccgaaccttgtgtatgcgggagctttagtg 19977730  T
Q  268 caccag 273  Q
    ||||||    
T  19977729 caccag 19977724  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 273
Target Start/End: Complemental strand, 32781401 - 32781299
Alignment:
Q  170 ggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtgca 269  Q
    |||||||||||||| ||||||||| | | |||||||||||||||||||| |||| |||||||| ||| ||| ||  ||||||| || ||||||| |||||    
T  32781401 ggaaacaacctcttgtgtaaaaaacagggtaagactgcgtacaatacaccaaatggtgggaccccttcccagaccctgtgtatgcgggagcttt-gtgca 32781303  T
Q  270 ccag 273  Q
    ||||    
T  32781302 ccag 32781299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 26684715 - 26684632
Alignment:
Q  188 aaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtgcacc 271  Q
    |||||||||| |||| |||||||||||| ||||||| |||||||||||| || |||  || |||| || |||||||| ||||||    
T  26684715 aaaaaatatggtaaggctgcgtacaatatactaaatggtgggacctcttcccgaaccctgcgtatgcgggagctttaatgcacc 26684632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 271
Target Start/End: Original strand, 11514456 - 11514558
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtg 267  Q
    ||||||||| |||||| ||||||||| |   |||| ||||||||||||||| |||| |||||||| ||| ||| ||  || |||| || |||||||||||    
T  11514456 ctggaaacagcctcttgtgtaaaaaacaaagtaaggctgcgtacaatacaccaaatggtgggacc-cttcccagaccctgcgtatgcgggagctttagtg 11514554  T
Q  268 cacc 271  Q
    ||||    
T  11514555 cacc 11514558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 5450305 - 5450370
Alignment:
Q  168 ctggaaacaacctcttatgt-aaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    |||||||||||||||| ||| |||||| ||| |||| ||||||||||||||| |||  ||||||||    
T  5450305 ctggaaacaacctcttgtgtaaaaaaacatggtaaggctgcgtacaatacaccaaagggtgggacc 5450370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 8455431 - 8455367
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    ||||||||| |||||| ||||||| | | | |||| ||||||||||||||| |||| ||||||||    
T  8455431 ctggaaacagcctcttgtgtaaaacacagggtaaggctgcgtacaatacaccaaatggtgggacc 8455367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 166 - 271
Target Start/End: Original strand, 46849 - 46954
Alignment:
Q  166 tgctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttag 265  Q
    |||||||||||||||||| ||||||||||| | ||||  |||||||||||||| |||| |||||||| ||| ||  ||  || |||| || |||||||||    
T  46849 tgctggaaacaacctcttgtgtaaaaaatagggtaaggttgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttag 46948  T
Q  266 tgcacc 271  Q
    ||||||    
T  46949 tgcacc 46954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 269
Target Start/End: Complemental strand, 24882 - 24786
Alignment:
Q  173 aacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtgca 269  Q
    |||| |||||| ||||||||| | | |||| |||||||||| |||| |||| |||||||| ||| || |||  || |||| || |||||||||||||    
T  24882 aacagcctcttgtgtaaaaaacagggtaaggctgcgtacaacacaccaaatggtgggaccccttcccgaaccctgcgtatgcgggagctttagtgca 24786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 271
Target Start/End: Original strand, 19027868 - 19027971
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtg 267  Q
    ||||||||||| |||| ||||||||| | | |||| ||||||||||||||| || | |||||||| ||||||| ||| || ||||  | |||||||||||    
T  19027868 ctggaaacaacatcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaattggtgggacccctttccagactctgcgtatgtgggagctttagtg 19027967  T
Q  268 cacc 271  Q
    ||||    
T  19027968 cacc 19027971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 9987949 - 9987885
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    |||||||||||||||| |||||| |||| | |||| |||| |||||||||| |||| ||||||||    
T  9987949 ctggaaacaacctcttgtgtaaacaatagggtaaggctgcatacaatacaccaaatggtgggacc 9987885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 10660424 - 10660474
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacac 218  Q
    |||||||||||||||||||||||||||| | || | |||| ||||||||||    
T  10660424 ctggaaacaacctcttatgtaaaaaatagggtatggctgcatacaatacac 10660474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 10874569 - 10874619
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacac 218  Q
    |||||||||||||||||||||||||||| | || | |||| ||||||||||    
T  10874569 ctggaaacaacctcttatgtaaaaaatagggtatggctgcatacaatacac 10874619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 16408718 - 16408668
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacac 218  Q
    ||||||||| |||||| ||||||||| | | ||||||||||||||||||||    
T  16408718 ctggaaacagcctcttgtgtaaaaaacagggtaagactgcgtacaatacac 16408668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 10380053 - 10379997
Alignment:
Q  172 aaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtggg 229  Q
    |||||||||||| |||||||| || ||||| | |||||||||||||| ||||||||||    
T  10380053 aaacaacctcttgtgtaaaaa-taggataaaattgcgtacaatacaccaaatagtggg 10379997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 14983857 - 14983918
Alignment:
Q  171 gaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    |||||| |||||| ||||||||||| | ||||  ||| ||||||||||||||| ||||||||    
T  14983857 gaaacagcctcttgtgtaaaaaatagggtaaggttgcctacaatacactaaatggtgggacc 14983918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 51865149 - 51865092
Alignment:
Q  172 aaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtggg 229  Q
    ||||| |||||| ||||||||| ||| |||| ||||||||||||||| |||| |||||    
T  51865149 aaacagcctcttgtgtaaaaaacatggtaaggctgcgtacaatacaccaaatggtggg 51865092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 17043509 - 17043445
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    ||||||||| |||||| ||||||| | | | |||| ||||||||||||||| |||| ||||||||    
T  17043509 ctggaaacagcctcttgtgtaaaatacagggtaaggctgcgtacaatacaccaaatggtgggacc 17043445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 271
Target Start/End: Complemental strand, 20639774 - 20639670
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaataca-ctaaatagtgggacctctttccaaactttgtgtatacgagagctttagt 266  Q
    ||||||||| |||||| ||||||||| | | |||| |||||||||||||| | |||| |||||||| ||| ||  ||  || |||| || ||||||||||    
T  20639774 ctggaaacagcctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagt 20639675  T
Q  267 gcacc 271  Q
    |||||    
T  20639674 gcacc 20639670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 25629069 - 25629133
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    |||||||||  ||||| ||||||||||| | |||| ||| ||||||||||| |||| ||||||||    
T  25629069 ctggaaacagtctcttgtgtaaaaaatagggtaaggctgtgtacaatacaccaaatggtgggacc 25629133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 41018908 - 41018845
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    |||||||||||||||| |||||||  || | |||| || |||||||||||| |||||||||||||    
T  41018908 ctggaaacaacctcttgtgtaaaat-tagggtaaggctacgtacaatacaccaaatagtgggacc 41018845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 47443977 - 47444041
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    ||||||||| ||||||  |||||||| | | |||| ||||||||||||||| |||| ||||||||    
T  47443977 ctggaaacagcctcttgcgtaaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacc 47444041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 22187305 - 22187355
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacac 218  Q
    ||||||||| |||||| ||||||||| ||||||||||||||||||||||||    
T  22187305 ctggaaacagcctcttgtgtaaaaaacatgataagactgcgtacaatacac 22187355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 1405207 - 1405271
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    |||||||||||||||||| |||||||||   ||||  |||||||||||||| |||| ||||||||    
T  1405207 ctggaaacaacctcttatataaaaaatagagtaagtttgcgtacaatacaccaaatggtgggacc 1405271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 24448910 - 24448974
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    ||||||||| ||| || ||||||||||| | |||| ||||||||||||||| |||| ||||||||    
T  24448910 ctggaaacagccttttgtgtaaaaaatagggtaaggctgcgtacaatacaccaaatggtgggacc 24448974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 12006445 - 12006395
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacac 218  Q
    |||||||||||||||||||||||||||| | |||| || | ||||||||||    
T  12006445 ctggaaacaacctcttatgtaaaaaatagggtaaggctccatacaatacac 12006395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 29334413 - 29334465
Alignment:
Q  166 tgctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacac 218  Q
    ||||||||||| |||||| ||||||||| | | |||| |||||||||||||||    
T  29334413 tgctggaaacagcctcttgtgtaaaaaacaaggtaaggctgcgtacaatacac 29334465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 269
Target Start/End: Original strand, 43207539 - 43207640
Alignment:
Q  169 tggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaa-tagtgggacctctttccaaactttgtgtatacgagagctttagtg 267  Q
    ||||||||||||||||||| ||||| | | |||||| || |||||||||| ||| | |||||||||||| ||| ||  | ||||| ||||||||||||||    
T  43207539 tggaaacaacctcttatgtgaaaaacagggtaagacggcatacaatacaccaaattggtgggacctcttcccagaccctatgtatgcgagagctttagtg 43207638  T
Q  268 ca 269  Q
    ||    
T  43207639 ca 43207640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 10163806 - 10163866
Alignment:
Q  172 aaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    |||||||||||||||||||||||||||||||| ||  |||||||||  |||| ||||||||    
T  10163806 aaacaacctcttatgtaaaaaatatgataagattgtatacaatacatcaaatggtgggacc 10163866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 46248067 - 46248004
Alignment:
Q  169 tggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    |||||||| |||||| ||||||||| | | |||||||||||||||||||| |||| ||||||||    
T  46248067 tggaaacagcctcttgtgtaaaaaacagggtaagactgcgtacaatacaccaaatggtgggacc 46248004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 269
Target Start/End: Complemental strand, 23768434 - 23768334
Alignment:
Q  169 tggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtgc 268  Q
    |||||||| |||||| ||||||||| | | |||| ||||||||||||||| |||| |||||||  ||| ||| ||  || |||| || ||||||||||||    
T  23768434 tggaaacagcctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacaccttcccagaccctgcgtatgcgggagctttagtgc 23768335  T
Q  269 a 269  Q
    |    
T  23768334 a 23768334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 273
Target Start/End: Complemental strand, 32632671 - 32632567
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtg 267  Q
    ||||||||| |||||| ||||||||  | | |||| ||||||||||||||| |||| |||||||| ||| ||||||  ||  ||| || |||||| ||||    
T  32632671 ctggaaacagcctcttgtgtaaaaac-agggtaaggctgcgtacaatacaccaaatggtgggaccccttcccaaaccctgcatatgcgggagcttgagtg 32632573  T
Q  268 caccag 273  Q
    ||||||    
T  32632572 caccag 32632567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 25468378 - 25468310
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctt 236  Q
    |||||||||||||||| ||||||||  | | ||||  |||||||||||||| |||| || |||||||||    
T  25468378 ctggaaacaacctcttgtgtaaaaatcagggtaaggttgcgtacaatacaccaaatggttggacctctt 25468310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 31382328 - 31382265
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    ||||||||| |||||| ||||||||  | |||||| ||||||||||||||| |||| ||||||||    
T  31382328 ctggaaacagcctcttgtgtaaaaac-aggataaggctgcgtacaatacaccaaatggtgggacc 31382265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 44485224 - 44485160
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    |||||||||||| ||| ||||||| | ||| |||| ||||||||||||||| |||| || |||||    
T  44485224 ctggaaacaaccacttgtgtaaaagacatggtaaggctgcgtacaatacaccaaatggttggacc 44485160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 46991847 - 46991911
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    |||||||||||||||| ||||||||| | | |||| ||| |||||||||||  ||| ||||||||    
T  46991847 ctggaaacaacctcttgtgtaaaaaacagggtaaggctgtgtacaatacaccgaatggtgggacc 46991911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 44530170 - 44530233
Alignment:
Q  169 tggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    ||||||||||||||| ||||||||| | | |||| ||||||||||||||| |||| ||||||||    
T  44530170 tggaaacaacctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacc 44530233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 8897879 - 8897815
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    |||||||||||| ||| ||||||||||| | |||| || |||||||||||| |||| ||||||||    
T  8897879 ctggaaacaaccgcttgtgtaaaaaatagggtaaggctacgtacaatacaccaaatggtgggacc 8897815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 36720816 - 36720880
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    ||||||||| |||||| ||||||||| | | |||| ||||||||||||||| |||| ||||||||    
T  36720816 ctggaaacagcctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacc 36720880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 12625909 - 12625974
Alignment:
Q  168 ctggaaacaacctcttatgt-aaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    |||||||||||||||| ||| |||||| | | ||||||||| |||||||||| |||| ||||||||    
T  12625909 ctggaaacaacctcttgtgtaaaaaaacagggtaagactgcatacaatacaccaaatggtgggacc 12625974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 269
Target Start/End: Complemental strand, 28817741 - 28817640
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtg 267  Q
    ||||||||| |||||| ||||||||| | | |||| |||||||||||||||  ||| |||||||| ||| ||  ||  || |||| || |||||||||||    
T  28817741 ctggaaacagcctcttgtgtaaaaaacagggtaaggctgcgtacaatacacccaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtg 28817642  T
Q  268 ca 269  Q
    ||    
T  28817641 ca 28817640  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 273
Target Start/End: Original strand, 29877114 - 29877219
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtg 267  Q
    ||||||||| ||| || ||||||||| | | |||| ||||||||||||||| |||| |||||||| ||| ||  ||  || |||| || |||| ||||||    
T  29877114 ctggaaacagccttttgtgtaaaaaacagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagcgttagtg 29877213  T
Q  268 caccag 273  Q
    ||||||    
T  29877214 caccag 29877219  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 269
Target Start/End: Original strand, 36918144 - 36918245
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtg 267  Q
    ||||||||||  |||||||||||||| | | |||| ||| ||||||||||| ||||||| |||   ||| ||||||  | ||||| ||||||||||| ||    
T  36918144 ctggaaacaatttcttatgtaaaaaacagggtaaggctgtgtacaatacaccaaatagtaggattccttcccaaaccctatgtatgcgagagctttaatg 36918243  T
Q  268 ca 269  Q
    ||    
T  36918244 ca 36918245  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 5135404 - 5135340
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    ||||||||| |||||| ||||||||| | | |||| ||| ||||||||||| |||| ||||||||    
T  5135404 ctggaaacagcctcttgtgtaaaaaagagggtaaggctgtgtacaatacaccaaatggtgggacc 5135340  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 8484053 - 8483989
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    |||||||||||||||| ||||||||| | |  ||| ||||||||||||||| || | ||||||||    
T  8484053 ctggaaacaacctcttgtgtaaaaaacagggcaaggctgcgtacaatacaccaattggtgggacc 8483989  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 16225049 - 16225089
Alignment:
Q  178 cctcttatgtaaaaaatatgataagactgcgtacaatacac 218  Q
    |||||||||||||||| | | ||||||||||||||||||||    
T  16225049 cctcttatgtaaaaaacagggtaagactgcgtacaatacac 16225089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 17823596 - 17823656
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgg 228  Q
    ||||||||| |||||| ||||||||  | |||||||||||||| ||||||| |||| ||||    
T  17823596 ctggaaacagcctcttgtgtaaaaaccaggataagactgcgtaaaatacaccaaatggtgg 17823656  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 20400688 - 20400751
Alignment:
Q  169 tggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    ||||||||| ||||| ||||||||| | | |||||||||||||| |||||||||||| ||||||    
T  20400688 tggaaacaatctcttgtgtaaaaaacagggtaagactgcgtacagtacactaaatagcgggacc 20400751  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 32728270 - 32728211
Alignment:
Q  169 tggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgg 228  Q
    ||||||||||||||||||||||||| | | |||||||| |||||||| || |||||||||    
T  32728270 tggaaacaacctcttatgtaaaaaacagggtaagactgtgtacaatataccaaatagtgg 32728211  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 3815192 - 3815128
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    |||||||||  || || ||||||||||||| || ||||||||||||||||| |||| ||||||||    
T  3815192 ctggaaacagactattgtgtaaaaaatatggtacgactgcgtacaatacaccaaatggtgggacc 3815128  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 6024256 - 6024303
Alignment:
Q  171 gaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacac 218  Q
    |||||| |||||| ||||||||| ||| ||||||||||||||||||||    
T  6024256 gaaacagcctcttgtgtaaaaaacatggtaagactgcgtacaatacac 6024303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 24751172 - 24751135
Alignment:
Q  185 tgtaaaaaatatgataagactgcgtacaatacactaaa 222  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  24751172 tgtaaaaaatagggtaagactgcgtacaatacactaaa 24751135  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 1941879 - 1941939
Alignment:
Q  172 aaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 232  Q
    |||||||||||| ||||||||| | | |||| |||||||||||||||  ||| ||||||||    
T  1941879 aaacaacctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccgaatggtgggacc 1941939  T

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Target: scaffold0049 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 269
Target Start/End: Original strand, 58997 - 59100
Alignment:
Q  168 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacac--taaatagtgggacctctttccaaactttgtgtatacgagagctttag 265  Q
    ||||||||| |||||| | ||||||| | | ||||||||||||||||||||   |||| |||||||| ||| ||| ||| || |||| || |||||||||    
T  58997 ctggaaacagcctcttgtataaaaaacagggtaagactgcgtacaatacaccaaaaatggtgggaccccttcccagactctgcgtatgcgggagctttag 59096  T
Q  266 tgca 269  Q
    ||||    
T  59097 tgca 59100  T

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Target: scaffold0187 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 232
Target Start/End: Complemental strand, 10134 - 10101
Alignment:
Q  199 taagactgcgtacaatacactaaatagtgggacc 232  Q
    |||||||||||||||||||| |||||||||||||    
T  10134 taagactgcgtacaatacaccaaatagtgggacc 10101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 232
Target Start/End: Complemental strand, 20462 - 20429
Alignment:
Q  199 taagactgcgtacaatacactaaatagtgggacc 232  Q
    |||||||||||||||||||| |||||||||||||    
T  20462 taagactgcgtacaatacaccaaatagtgggacc 20429  T

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Target: scaffold0194 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 271
Target Start/End: Original strand, 24699 - 24771
Alignment:
Q  199 taagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtgcacc 271  Q
    |||||||||||| ||||||| |||||||||  || ||||||| ||  || ||||||| |||||| ||||||||    
T  24699 taagactgcgtataatacaccaaatagtggaccccctttccagaccctgcgtatacgggagcttcagtgcacc 24771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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