View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16279_high_3 (Length: 339)
Name: NF16279_high_3
Description: NF16279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16279_high_3 |
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| [»] scaffold0770 (1 HSPs) |
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| [»] scaffold0029 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 50565939 - 50566266
Alignment:
| Q |
1 |
aagatcacataagtttctaaaaattcttcttatacaatactcttacataccctctcaaattgaaatttcatacactcatatgtattaaggagttgttcat |
100 |
Q |
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||||| |||||| ||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||| ||| ||||||||||| |
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| T |
50565939 |
aagataacataattttttaagaattcttcttctacaatactcttacataccctctcaaattgaaatttcatatactcat--gtactaaagagttgttcat |
50566036 |
T |
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| Q |
101 |
aagacatatttataatcaatttatgcagcagttattagtcggtgtgaacttgaagggctaagaata-atttaaaaggttgaactcaaaataaacccataa |
199 |
Q |
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|||||||||||||||||||||||||| | ||| |||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
50566037 |
aagacatatttataatcaatttatgcggtagtcattagtttgtgtgaacttgaaaggctaagaatacatttaaaaggttgaactcaaaataaacccacaa |
50566136 |
T |
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| Q |
200 |
taaaacatttaaagagggtgcatcattccccctttctttacattaaaagttgggcacattcaagcctagaagaagaccgcacatctaatatttaaac--- |
296 |
Q |
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||||||||| |||||||||||||| || | |||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||| |
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| T |
50566137 |
taaaacatt-aaagagggtgcatcctttcacctttctttacattaaaagttgggcacatttaagtctagaagaagaatgcacatctaatatttaaacctt |
50566235 |
T |
|
| Q |
297 |
ttataattaacatattaaactactttatatt |
327 |
Q |
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||||||||||| ||||||||| |||||||| |
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| T |
50566236 |
atataattaacacattaaactaatttatatt |
50566266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 50513762 - 50514040
Alignment:
| Q |
1 |
aagatcacataagtttctaaaaattcttcttatacaatactcttacataccctctcaaattgaaatttcatacactcatatgtattaaggagttgttcat |
100 |
Q |
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|||||||||||||||| ||| | |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||| |
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| T |
50513762 |
aagatcacataagtttttaagagttcttcttcaacaatactcttacataccctctcaaattgaaatttcatatactcatatgtactaaagagttgttcat |
50513861 |
T |
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| Q |
101 |
aagacatatttataatcaatttatgcagcagttattagtcggtgtgaacttgaagggctaagaataa-tttaaaaggttgaactcaaaataaacccataa |
199 |
Q |
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| T |
50513862 |
aagacatatt----------------------tattagtctgtgtgaacttgaaaggctaagaataaatttaaaaggttgaactcaaaataaatccacaa |
50513939 |
T |
|
| Q |
200 |
taaaacatttaaagagggtgcatcattccccctttctttacattaaaagttgggcacattcaagcctagaagaagaccgcacatctaatatttaaactta |
299 |
Q |
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| T |
50513940 |
taaaacatt-aaagagggtgcatcctttcacctttctttacattaaaagttgggcacatttaagtctagaagaagaatgcacatctaatatttaaactta |
50514038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 214 - 327
Target Start/End: Original strand, 38924568 - 38924681
Alignment:
| Q |
214 |
agggtgcatcattccccctttctttacattaaaagttgggcacattcaagcctagaagaagaccgcacatctaatatttaaacttataattaacatatta |
313 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38924568 |
agggtgcaacattttccctttctttacattaaaagttgggcacattcaaacctagaagaagaccgcacatctaatatttaaacttataattaacgtatta |
38924667 |
T |
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| Q |
314 |
aactactttatatt |
327 |
Q |
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||||| |||||||| |
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| T |
38924668 |
aactaatttatatt |
38924681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 38924520 - 38924568
Alignment:
| Q |
1 |
aagatcacataagtttctaaaaattcttcttatacaatactcttacata |
49 |
Q |
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| T |
38924520 |
aagatcacataagtttttaaaaattcttcttatacaatactcttacata |
38924568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0770 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0770
Description:
Target: scaffold0770; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 4586 - 4518
Alignment:
| Q |
27 |
ttcttatacaatactcttacataccctctcaaattgaaatttcatacactca-tatgtattaaggagttgttca |
99 |
Q |
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| T |
4586 |
ttcttctacaatactctta-----cctctcaaattgaaatttcatacactcattatgtactaaggagttgttca |
4518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 102890 - 102822
Alignment:
| Q |
27 |
ttcttatacaatactcttacataccctctcaaattgaaatttcatacactca-tatgtattaaggagttgttca |
99 |
Q |
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||||| ||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
102890 |
ttcttctacaatactctta-----cctctcaaattgaaatttcatacactcattatgtactaaggagttgttca |
102822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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