View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16279_low_1 (Length: 737)
Name: NF16279_low_1
Description: NF16279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16279_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 626; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 1 - 726
Target Start/End: Complemental strand, 39976201 - 39975476
Alignment:
| Q |
1 |
caatttatagaatccttcttggtattttcctaccttacaaattagcacttgaattgggagtttggagtggcatagatctaaaaatcaaaggcactatccc |
100 |
Q |
| |
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||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39976201 |
caatttatagaatacttcttggtattttccttccttacaaattagcacttgaattaggagtttggagtggcatagatctaaaaatcaaaggcactatccc |
39976102 |
T |
|
| Q |
101 |
tnnnnnnnnnnnnnnnnnnnnnggtgttttgtttgtatgcacacataggacattgttggatcctgttttcttaagcacatcattagcaaagccattaact |
200 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39976101 |
taaaaaaacaaaaccaaacaaaggtgttttgtttgtatgcacacataggacattgttggatcctgttttcttaagcacatcattagcaaagccattaact |
39976002 |
T |
|
| Q |
201 |
gcagtaacatatagtttaagcaaagtttctgagttcatagcaccaataaaaacagtgagattaacaagagacagaaaacaagatggtgaaacaatgcaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39976001 |
gcagtaacatatagtttaagcaaagtttctgagttcatagcaccaataaaaacagtgagattaacaagagacagaaaacaagatggtgaaacaatgcaaa |
39975902 |
T |
|
| Q |
301 |
agttactaagagaaggtgatttagttgtttgtcctgaaggaacaacatgtagagaaccatatttgttaaggtttagttcattgtttgctgagttggctaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39975901 |
agttactaagagaaggtgatttagttgtttgtcctgaaggaacaacatgtagagaaccatatttgttaaggtttagttcattgtttgctgagttggctaa |
39975802 |
T |
|
| Q |
401 |
tgagatagtgcctgtggcaatgaatactcatgtcagcatgttttatgggaccacagcaagcggattgaagtgtttggatcctannnnnnncttgatgaat |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
39975801 |
tgagatagtgcctgtggcaatgaatactcatgtcagcatgttttatgggaccacagcaagcggattgaagtgtttggatcctatttttttcttgatgaat |
39975702 |
T |
|
| Q |
501 |
cctaagccaagttatcatattcaaattcttgggaaggtacctaaagaacttacatgtgctggaggaaagtcaagtgttgaagtggctaattatatacaga |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39975701 |
cctaagccaagttatcatattcaaattcttgggaaggtacctaaagaacttacatgtgctggaggaaagtcaagtgttgaagtggctaattatatacaga |
39975602 |
T |
|
| Q |
601 |
aacaattgggtgatgctttgaggtttgagtgtacaaattttactaggagggataagtatatgatgcttgcagggaatgaagggattgttccacaagttag |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39975601 |
aacaattgggtgatgctttgaggtttgagtgtacaaattttactaggagggataagtatatgatgcttgcagggaatgaagggattgttcaacaagttag |
39975502 |
T |
|
| Q |
701 |
taatttgaaaaaatgctattgatgat |
726 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
39975501 |
taatttgaaaaaatgctattgatgat |
39975476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 330 - 392
Target Start/End: Complemental strand, 25552961 - 25552899
Alignment:
| Q |
330 |
tgtcctgaaggaacaacatgtagagaaccatatttgttaaggtttagttcattgtttgctgag |
392 |
Q |
| |
|
||||| ||||||||||| ||||||||||| || ||| ||||||||||| | |||||||||||| |
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|
| T |
25552961 |
tgtccagaaggaacaacttgtagagaaccttacttgctaaggtttagtcctttgtttgctgag |
25552899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 1e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 256 - 682
Target Start/End: Complemental strand, 16147724 - 16147298
Alignment:
| Q |
256 |
tgagattaacaagagacagaaaacaagatggtgaaacaatgcaaaagttactaagagaaggtgatttagttgtttgtcctgaaggaacaacatgtagaga |
355 |
Q |
| |
|
|||| |||||||| || ||| |||||||| | ||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
16147724 |
tgagtttaacaagggatagagaacaagatagggaaacaatgcaaaggttgttaagtgaaggtgatttagttgtttgtcctgaaggaacaacttgtaggga |
16147625 |
T |
|
| Q |
356 |
accatatttgttaaggtttagttcattgtttgctgagttggctaatgagatagtgcctgtggcaatgaatactcatgtcagcatgttttatgggaccaca |
455 |
Q |
| |
|
||| ||||| ||||||||||||||| | |||||||| | ||| ||||||| || || ||||| |||||| | |||| || ||||||||||| || ||| |
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|
| T |
16147624 |
accttatttattaaggtttagttcactttttgctgaacttgctgatgagattgttccagtggctatgaatgttaatgtgagtatgttttatggtacaaca |
16147525 |
T |
|
| Q |
456 |
gcaagcggattgaagtgtttggatcctannnnnnncttgatgaatcctaagccaagttatcatattcaaattcttgggaaggtacctaaagaacttacat |
555 |
Q |
| |
|
|| || ||||| || |||||||| || ||||||||||| ||| |||||| ||||| || | |||| |||||||| |||||||| || | |
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| T |
16147524 |
gctagtggattaaaatgtttggactcttttctatttttgatgaatccatggcctagttataatattgaagtacttgaaaaggtaccaaaagaactcactt |
16147425 |
T |
|
| Q |
556 |
gtgctggaggaaagtcaagtgttgaagtggctaattatatacagaaacaattgggtgatgctttgaggtttgagtgtacaaattttactaggagggataa |
655 |
Q |
| |
|
||||||| ||||| || | |||||||||||||||||||||| | | | |||||||||||||| ||||||||||||||||| |||| ||||||||||| |
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|
| T |
16147424 |
gtgctggtggaaaatctccttttgaagtggctaattatatacaaagagagttgggtgatgctttagggtttgagtgtacaaatattacaaggagggataa |
16147325 |
T |
|
| Q |
656 |
gtatatgatgcttgcagggaatgaagg |
682 |
Q |
| |
|
||||||||| | || ||||||||||| |
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|
| T |
16147324 |
atatatgatgttagctgggaatgaagg |
16147298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 264 - 679
Target Start/End: Original strand, 16195219 - 16195634
Alignment:
| Q |
264 |
acaagagacagaaaacaagatggtgaaacaatgcaaaagttactaagagaaggtgatttagttgtttgtcctgaaggaacaacatgtagagaaccatatt |
363 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||||||| ||| || || ||||||||||||||||| || |||||||||||||| ||||| ||||| |||| |
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|
| T |
16195219 |
acaagagacagagaacaagatagggaaacaatgcaaaggttgcttagggaaggtgatttagttgtgtgccctgaaggaacaacttgtagggaaccttatt |
16195318 |
T |
|
| Q |
364 |
tgttaaggtttagttcattgtttgctgagttggctaatgagatagtgcctgtggcaatgaatactcatgtcagcatgttttatgggaccacagcaagcgg |
463 |
Q |
| |
|
| ||||||||||||||| | |||||||| | ||| ||||||| || || ||||| |||||| | |||| || ||||||||||| || ||||| || || |
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|
| T |
16195319 |
tattaaggtttagttcactttttgctgaaattgctgatgagattgttccagtggctatgaatgataatgtgagtatgttttatggtacaacagctagtgg |
16195418 |
T |
|
| Q |
464 |
attgaagtgtttggatcctannnnnnncttgatgaatcctaagccaagttatcatattcaaattcttgggaaggtacctaaagaacttacatgtgctgga |
563 |
Q |
| |
|
||| || |||||||| ||| ||||||||||| |||||||||| | ||| |||| |||| || || || |||||||| || |||||||| |
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|
| T |
16195419 |
attaaaatgtttggacccttttctatttttgatgaatccatggccaagttataacattgaaatgcttgataaagttccaaaagaactcacttgtgctggt |
16195518 |
T |
|
| Q |
564 |
ggaaagtcaagtgttgaagtggctaattatatacagaaacaattgggtgatgctttgaggtttgagtgtacaaattttactaggagggataagtatatga |
663 |
Q |
| |
|
|||||||| | ||||||||||| |||||||||||||| ||||| ||||||||||| | |||||||| || ||| |||| ||||||||||| ||||||| |
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| T |
16195519 |
ggaaagtctccttttgaagtggctgattatatacagaaagaattgagtgatgctttgggatttgagtgcaccaatattacaaggagggataaatatatga |
16195618 |
T |
|
| Q |
664 |
tgcttgcagggaatga |
679 |
Q |
| |
|
|| | || |||||||| |
|
|
| T |
16195619 |
tgttagctgggaatga |
16195634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 50133656 - 50133706
Alignment:
| Q |
251 |
aacagtgagattaacaagagacagaaaacaagatggtgaaacaatgcaaaa |
301 |
Q |
| |
|
|||||||||||||| ||| | ||||||| |||||||||||||||||||||| |
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|
| T |
50133656 |
aacagtgagattaataaggggcagaaaataagatggtgaaacaatgcaaaa |
50133706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 313 - 391
Target Start/End: Complemental strand, 38792363 - 38792285
Alignment:
| Q |
313 |
aaggtgatttagttgtttgtcctgaaggaacaacatgtagagaaccatatttgttaaggtttagttcattgtttgctga |
391 |
Q |
| |
|
|||| ||| ||||||| ||||| ||||| || || ||||||||||| ||||| ||||||||||| || |||||| |||| |
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|
| T |
38792363 |
aaggggatgtagttgtgtgtccagaagggaccacttgtagagaaccttatttattaaggtttagctctttgttttctga |
38792285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 28538474 - 28538563
Alignment:
| Q |
3 |
atttatagaatccttcttggtattttcctaccttacaaattagcacttgaattgggagtttggagtggcatagatctaaaaatcaaaggc |
92 |
Q |
| |
|
|||||||||| ||||||||||| |||||| |||||||||| || |||| ||| |||||||| ||||| | |||| | || ||||||||| |
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|
| T |
28538474 |
atttatagaacccttcttggtaatttccttccttacaaatgggcccttgcattaggagtttgaagtggtacagatttgaatatcaaaggc |
28538563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 28538603 - 28538651
Alignment:
| Q |
132 |
tttgtatgcacacataggacattgttggatcctgttttcttaagcacat |
180 |
Q |
| |
|
||||||||||||||||||||| | |||||||| |||||| ||||||||| |
|
|
| T |
28538603 |
tttgtatgcacacataggacacttttggatccagttttcctaagcacat |
28538651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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