View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1627_high_11 (Length: 541)
Name: NF1627_high_11
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Complemental strand, 41787508 - 41786966
Alignment:
| Q |
1 |
cagagttaacggtagttgcctgcacattaggtttgcaaataatgggtgcatgcatacccttaaagggtacaatcgtttccctacatatgttcttgagagt |
100 |
Q |
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| T |
41787508 |
cagagttaacggtagttgcctgcacattaggtttgcgaa-aatgggtgcatgcatacctttaaagggtacaatcgtttccctacatatgttcttgagagt |
41787410 |
T |
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| Q |
101 |
tctttaaatttgcatggagccgccaatggttgcatggttattatatgcaaggtatgcgattaagtaaaaccaaaataaactcatttgttgcatcacataa |
200 |
Q |
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| T |
41787409 |
tctttaaatttgcatggagccgccaatggttgcatggttattatatgcaaggtatgcgattaagtaaaaccaaaataaactcatttgttgcatcacataa |
41787310 |
T |
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| Q |
201 |
taaaaaaggagtatttattattttggaacataaaagacaaattgaaac-----------------acttgaaattgaaaacttaaaacagtacatatagg |
283 |
Q |
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| T |
41787309 |
taaaaaaggagtatttgttattttggaacataaaagacaaattgaaacatatagaaaatacaaagacttgaaattgaaaacttaaaacagtacatatagg |
41787210 |
T |
|
| Q |
284 |
acagttaaagatgtggattggaagcagaatctaatacatgaaccaaattgctagtattttaacattattaactttgacaaatttaaaacgggctatatct |
383 |
Q |
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| T |
41787209 |
acagttaaagatgtggattggaagcagaatcaaatacatgaaccaaattgctagtattttaatattattaactttgacaaatttaaaacgggctatatct |
41787110 |
T |
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| Q |
384 |
cc--atatttgagttgactctgggtacaaaattcattccctccatctcattcctattttggtgctccttcttggctagnnnnnnnnccttccagtcttta |
481 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41787109 |
ccatatatttgagttgactctgggtacaaaattcattccctccatctcattcctattttggtgctccttcttggctagttttttttccttccagtcttta |
41787010 |
T |
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| Q |
482 |
accatttggaggaaattctatttgaggtgtgtcacactaaatgt |
525 |
Q |
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| T |
41787009 |
accatttggaggaaattctatttgaggtgtgtcacactaaatgt |
41786966 |
T |
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