View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1627_high_12 (Length: 533)
Name: NF1627_high_12
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 18 - 506
Target Start/End: Complemental strand, 7782131 - 7781641
Alignment:
| Q |
18 |
agaacagttagcttcttcatactttgtcggagaggatcttctacgcaggtg--atctactagaccgatgaagtcataagaagaatggtgattgacttcat |
115 |
Q |
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| T |
7782131 |
agaacagttagcttcttcatactttgtcggagaggatcttctacgcaggtgggatctactagactgatgaagtcataagaagaatggtgattgacttcat |
7782032 |
T |
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| Q |
116 |
gagtttggaggatactatccactcagctgtaactttctgcgcttggaaaaactataaagtaataagatatatatcgaatttgagtttcaagtttaattga |
215 |
Q |
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| T |
7782031 |
gagtttggaggttactatccactcagctgtaactttctgcgtttggaaaaactataaggtaataagatatatatcgaatttgagtttcaagtttaattga |
7781932 |
T |
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| Q |
216 |
agtaagtttgtttaattcaaagcacctttgcttttagtatccagcaaatggaacttgatttagtctacttggtattattcttcaaactattcgactggtc |
315 |
Q |
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| T |
7781931 |
agtgagtttgtttaattcaaagcacctttgcttttagtatccagcaaatggaacttgatttagtctacttggtattattcttcaaactattcgactgatc |
7781832 |
T |
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| Q |
316 |
tttcttgaagtgcaaaaagatttcgctgaaaaagttccataaactgggtaatgatgtctttttccatttgcagtatgttgcttatttgatttgcttttag |
415 |
Q |
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| T |
7781831 |
tttcttgaagtgaaaaaagatttcgctgaaaaagttccataaactgggtaatgatgtctttttccatttgcagtatgttacttatttcatttgcttttag |
7781732 |
T |
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| Q |
416 |
ctattatttgtcatagattctacttctgactattcgattctccagtatttaggatcttgaggtttgagcatcatagatgtgtatcaatttc |
506 |
Q |
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| T |
7781731 |
ctgttatttgtcatgcattctacttctgactattagattctcaagtatttaggatcttgaggtttgagcatcatagatgtgtatcaatttc |
7781641 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 5524340 - 5524381
Alignment:
| Q |
73 |
actagaccgatgaagtcataagaagaatggtgattgacttca |
114 |
Q |
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| T |
5524340 |
actagactgatgaagtcataagaagagtagtgattgacttca |
5524381 |
T |
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