View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1627_high_13 (Length: 528)
Name: NF1627_high_13
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 439; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 14 - 515
Target Start/End: Complemental strand, 1200568 - 1200057
Alignment:
| Q |
14 |
atcagtatgcaattctaattcttcaactaacatggaattttttaaaagtgaacgagttacaagaccagacaatgagaattgaaaatgtgaatggattcga |
113 |
Q |
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| T |
1200568 |
atcagtatgcaattctaattcttcaactaacatggaattttttaaaagtgaacgagttacaagaccagacaatgagaattgaaaatgtgaatggattcga |
1200469 |
T |
|
| Q |
114 |
agagttttaaatcgtcttcgattgaagatgttagagaaccatgcatctagaagtgatgtttcataccttccaaagaggaaa--agaaaagctgtccagga |
211 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1200468 |
agagttttaactcgtcttcgattgaagatgttagagaaccatgcatctagaagtgatgtttcataccttccaaagaggaaaagagaaaagctgtccagga |
1200369 |
T |
|
| Q |
212 |
ttataccatcagtatgaatcagggctctatcaacaaacctaacaaagtttcgtgttcttcgaagcctaacaaattgatcattgattaaatcattttgacg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1200368 |
ttataccatcagtatgaatcagggctctatcaacaaacctaacaaagtttcgtgttcttcgaagcctaacaagttgatcattgattaaatcattttgacg |
1200269 |
T |
|
| Q |
312 |
a-----gtgtaaggagagcttggtaagggaagtccaacggtgttcccatgttttggataagacagaagtgcgaactgcgtctttggttggaaggaaagag |
406 |
Q |
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| T |
1200268 |
atgatcgtgtaaggagagtttggtgaggaaagtccaacggtgttcccatgttttggataagacagaagtgcgaactgcgtctttggttggaaggaaagag |
1200169 |
T |
|
| Q |
407 |
agaatgtgagttatcactggttcagggatcttggtgtggaaaatgtcttctt---cttctttaacagcatttgcatttgctatttcggcattcttacggc |
503 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1200168 |
agaatgtgagttatcactggttcagggatcttggtgtggaatatgtcttcttctgcttctttaacagcatttgcatttgctatttcggcattcttaaggc |
1200069 |
T |
|
| Q |
504 |
acattccgcttc |
515 |
Q |
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|||||||||||| |
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| T |
1200068 |
acattccgcttc |
1200057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 313 - 420
Target Start/End: Complemental strand, 1213591 - 1213484
Alignment:
| Q |
313 |
gtgtaaggagagcttggtaagggaagtccaacggtgttcccatgttttggataagacagaagtgcgaactgcgtctttggttggaaggaaagagagaatg |
412 |
Q |
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|||||| ||||| ||||| || |||||||| ||||||||||| | || ||||||| |||||||||||| |||||||||||||| || |||||||||||| |
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| T |
1213591 |
gtgtaaagagagtttggtgagtgaagtccagcggtgttcccaactcttagataagatagaagtgcgaacagcgtctttggttgggagaaaagagagaatg |
1213492 |
T |
|
| Q |
413 |
tgagttat |
420 |
Q |
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|||||||| |
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| T |
1213491 |
tgagttat |
1213484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 314 - 432
Target Start/End: Complemental strand, 580070 - 579952
Alignment:
| Q |
314 |
tgtaaggagagcttggtaagggaagtccaacggtgttcccatgttttggataagacagaagtgcgaactgcgtctttggttggaaggaaagagagaatgt |
413 |
Q |
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| T |
580070 |
tgtaaggagagtttggtgatggaagtccaacgacgttcccattttttggataagatggaggtgcgaatagcatctttggttggtacgaaactgagaatgt |
579971 |
T |
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| Q |
414 |
gagttatcactggttcagg |
432 |
Q |
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||||||||||||||||||| |
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| T |
579970 |
gagttatcactggttcagg |
579952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 1203816 - 1203756
Alignment:
| Q |
22 |
gcaattctaattcttcaactaacatggaattttttaaaagtgaacgagttacaagaccaga |
82 |
Q |
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|||||||||||||||||||||||||||| || || ||||| ||| ||| |||||||||||| |
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| T |
1203816 |
gcaattctaattcttcaactaacatggagttcttgaaaagagaatgagatacaagaccaga |
1203756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 315 - 420
Target Start/End: Complemental strand, 1079132 - 1079027
Alignment:
| Q |
315 |
gtaaggagagcttggtaagggaagtccaacggtgttcccatgttttggataagacagaagtgcgaactgcgtctttggttggaaggaaagagagaatgtg |
414 |
Q |
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|||||||||| ||||||||| ||||||||||||||| |||| ||| ||||||||| |||||||||| || ||||||||||| || ||||||| ||||| |
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| T |
1079132 |
gtaaggagagtttggtaaggaaagtccaacggtgtttccattgtttagataagacacaagtgcgaacggcatctttggttgggagaaaagagatgatgtg |
1079033 |
T |
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| Q |
415 |
agttat |
420 |
Q |
| |
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|||||| |
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| T |
1079032 |
agttat |
1079027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 315 - 420
Target Start/End: Original strand, 5132674 - 5132779
Alignment:
| Q |
315 |
gtaaggagagcttggtaagggaagtccaacggtgttcccatgttttggataagacagaagtgcgaactgcgtctttggttggaaggaaagagagaatgtg |
414 |
Q |
| |
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|||||||||| ||||||||| ||||||||||||||| |||| ||| ||||||||| |||||||||| || ||||||||||| || ||||||| ||||| |
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| T |
5132674 |
gtaaggagagtttggtaaggaaagtccaacggtgtttccattgtttagataagacacaagtgcgaacggcatctttggttgggagaaaagagatgatgtg |
5132773 |
T |
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| Q |
415 |
agttat |
420 |
Q |
| |
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|||||| |
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| T |
5132774 |
agttat |
5132779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 459
Target Start/End: Original strand, 8193298 - 8193444
Alignment:
| Q |
313 |
gtgtaaggagagcttggtaagggaagtccaacggtgttcccatgttttggataagacagaagtgcgaactgcgtctttggttggaaggaaagagagaatg |
412 |
Q |
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||||| |||||| || || ||||||| ||||||| || |||| |||||||||| | | ||| ||||| || |||| || ||||| |||||||||||| |
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| T |
8193298 |
gtgtatggagagtttagtgagggaagaccaacgggttttccattttttggataaaagaaaagcacgaacagcatcttccgtcggaagaaaagagagaatg |
8193397 |
T |
|
| Q |
413 |
tgagttatcactggttcagggatcttggtgtggaaaatgtcttcttc |
459 |
Q |
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| T |
8193398 |
tgagttattagttgttcagggagcttgttgtagaatatgtcatcttc |
8193444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 8193093 - 8193172
Alignment:
| Q |
84 |
aatgagaattgaaaatgtgaatggattcgaagagttttaaatcgtcttcgattgaagatgttagagaaccatgcatctagaag |
166 |
Q |
| |
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||||||| |||||| || ||||||||||||||| |||||| ||| || ||||||||||||||||||||| ||||||||| |
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| T |
8193093 |
aatgagagttgaaactgcgaatggattcgaagatttttaa---ctctgcggttgaagatgttagagaaccatatatctagaag |
8193172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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