View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1627_high_16 (Length: 506)
Name: NF1627_high_16
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 5 - 413
Target Start/End: Complemental strand, 40681538 - 40681120
Alignment:
| Q |
5 |
ggtagattatactctataatatgggaacttagacactatagtaatgtattatattgtcaatgtcaattgaaaaacgcaactgcaatattatttatgcatg |
104 |
Q |
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| T |
40681538 |
ggtatattttactctataatatgggaacttagacactatagtaatgtattatattgtcaatgtcaattgaaaaacgcaactgcaatattat----gcatg |
40681443 |
T |
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| Q |
105 |
tcttttactcattctaatacaaagactgaagataattaaaagagatttcttttactggtaggtcacaaaaac--------------ttgtaacacagaca |
190 |
Q |
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| T |
40681442 |
tcttttactcattctaatacaaagactgaagataattaaaagagatttcttttactggtaggtcacaaaaacagaacagcaaaaacttgtaacacagaca |
40681343 |
T |
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| Q |
191 |
gtagctgaaatcaaacacataagttgaagaaaa--gcatcaatatacatgcataaataccttgattattcgaaacaagttgttgcaatgttccaacacaa |
288 |
Q |
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| T |
40681342 |
gtagctgaaatcaaacacataagttgaagaaaattgcatcaatatacatgcataaataccttgattattcgaaagaagttgttgcaatgttccaacacaa |
40681243 |
T |
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| Q |
289 |
gcttatgtacagattcagctgtaaattctgtcaatgatggacatggaagcttggagagtaatactgatagaggtagagtgtagtgagtgagtagtgacat |
388 |
Q |
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| T |
40681242 |
gcttatgtacagattcagctgtaaattctgtcaatgatggacatgtaagcttggagagtgatactgatagaggtagagtgtagtgagtgagtagtgacat |
40681143 |
T |
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| Q |
389 |
gtgagtgtgtacaaatatacatatg |
413 |
Q |
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| T |
40681142 |
gtga--gtgtacaaatatacatatg |
40681120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 461 - 489
Target Start/End: Complemental strand, 40681072 - 40681044
Alignment:
| Q |
461 |
tgtgtctcagatgcagattctctacttta |
489 |
Q |
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| T |
40681072 |
tgtgtctcagatgcagattctctacttta |
40681044 |
T |
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